Factsheet for Bra025644.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra011099.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026812.1-P
Bra026830.1-P
Bra027455.1-P
Bra031859.1-P
Bra036852.1-P
Bra037224.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39760.1	Bra026219.1-P	AT1G14440.1	16428600
AT5G39760.1	Bra026830.1-P	AT1G14440.1	16428600
AT5G39760.1	Bra026812.1-P	AT1G14687.1	21798944
AT5G39760.1	Bra004399.1-P	AT1G69600.1	16428600
AT5G39760.1	Bra007869.1-P	AT1G69600.1	16428600
AT5G39760.1	Bra008185.1-P	AT1G75240.1	16428600
AT5G39760.1	Bra015857.1-P	AT1G75240.1	16428600
AT5G39760.1	Bra037224.1-P	AT2G18350.1	16428600
AT5G39760.1	Bra025363.1-P	AT3G28920.1	16428600
AT5G39760.1	Bra039038.1-P	AT3G28920.1	16428600
AT5G39760.1	Bra012882.1-P	AT3G50890.1	16428600
AT5G39760.1	Bra036852.1-P	AT3G50890.1	16428600
AT5G39760.1	Bra011099.1-P	AT4G29350.1	21798944
AT5G39760.1	Bra008712.1-P	AT5G15210.1	16428600
AT5G39760.1	Bra008712.1-P	AT5G15210.1	21245844
AT5G39760.1	Bra008712.1-P	AT5G15210.1	21798944
AT5G39760.1	Bra025644.1-P	AT5G39760.1	16428600
AT5G39760.1	Bra025644.1-P	AT5G39760.1	21245844
AT5G39760.1	Bra027455.1-P	AT5G42780.1	16428600
AT5G39760.1	Bra027455.1-P	AT5G42780.1	21798944
AT5G39760.1	Bra024382.1-P	AT5G65410.1	16428600
AT5G39760.1	Bra031859.1-P	AT5G65410.1	16428600
AT5G39760.1	Bra037816.1-P	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74428	Canola	nucleus	100.0	100.0
CDY56033	Canola	nucleus	83.6	95.67
AT5G39760.1	Thale cress	nucleus	81.7	77.54
Bra039038.1-P	Field mustard	nucleus	64.04	65.7
Bra025363.1-P	Field mustard	nucleus	67.82	62.5
Bra008712.1-P	Field mustard	cytosol	44.8	53.99
Solyc02g067310.2.1	Tomato	nucleus	47.32	51.37
KRH01172	Soybean	nucleus	53.63	50.3
PGSC0003DMT400035635	Potato	nucleus	48.58	50.16
KRH18475	Soybean	nucleus	52.05	49.85
Solyc02g067320.1.1	Tomato	nucleus	50.79	48.64
PGSC0003DMT400034368	Potato	nucleus	53.0	48.55
PGSC0003DMT400017840	Potato	nucleus	50.16	48.33
Bra006657.1-P	Field mustard	nucleus	27.13	47.25
VIT_14s0108g00750.t01	Wine grape	nucleus	51.1	45.63
KRH40099	Soybean	nucleus, plastid	42.59	43.83
Bra004399.1-P	Field mustard	nucleus	31.86	43.72
Bra025688.1-P	Field mustard	mitochondrion	11.99	43.18
Bra031051.1-P	Field mustard	mitochondrion	11.99	43.18
Bra007869.1-P	Field mustard	nucleus	30.91	42.61
Bra016538.1-P	Field mustard	mitochondrion	11.36	40.91
Bra015898.1-P	Field mustard	mitochondrion	11.36	38.3
Bra003791.1-P	Field mustard	mitochondrion	11.67	38.14
Bra036852.1-P	Field mustard	nucleus	25.87	37.44
Bra010485.1-P	Field mustard	nucleus	23.97	36.19
Bra013822.1-P	Field mustard	nucleus	25.55	36.0
Bra039039.1-P	Field mustard	mitochondrion	11.04	35.71
Bra025362.1-P	Field mustard	mitochondrion	11.04	35.0
Bra037816.1-P	Field mustard	nucleus	26.18	34.3
Bra031859.1-P	Field mustard	nucleus	27.76	32.35
Bra024382.1-P	Field mustard	nucleus	27.13	29.35
Bra003759.1-P	Field mustard	nucleus	27.13	29.25
Bra026589.1-P	Field mustard	nucleus	27.13	28.67
Bra012882.1-P	Field mustard	nucleus	23.66	28.3
Bra008185.1-P	Field mustard	nucleus	26.18	28.23
Bra015857.1-P	Field mustard	nucleus	26.5	27.81
Bra026219.1-P	Field mustard	nucleus	26.5	27.1
Bra026830.1-P	Field mustard	nucleus	26.81	27.07
Bra037224.1-P	Field mustard	nucleus	21.45	25.66
Bra027455.1-P	Field mustard	nucleus	19.56	21.6
Bra039615.1-P	Field mustard	cytosol	11.36	19.89

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra025644	EnsemblPlants:Bra025644.1	EnsemblPlants:Bra025644.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0009719
GO:GO:0009739	GO:GO:0042803	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	UniProt:M4EA37
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF47	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002544B3D	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:

Description

AT5G39760 (E=4e-084) AtHB23 | AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor

Coordinates

chrA04:+:7296642..7297595

Molecular Weight (calculated)

34367.9 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.876

Length

317 amino acids

Sequence
(BLAST)

001: MDMATHTTIT SPPKSPEPEP ETPNRIQPAK PISFSNGIIK RHHHPTLLFT YKECLKNHAA ALGSHALDGC GEFMPSPSLV STDPTSLKCA ACGCHRNFHR
101: REPGNDSSIR PPPSSVAATI EYQPHHRHHP PPPPQLPPPR SPNSSSPPPI SSSYMLLSLS GTNNNNNLAF SGNNHHHQTG SRKRFRTKFS QFQKEKMHEF
201: ADRVGWKMQK RDEDDVREFC RQIGVDKSVL KVWMHNNKNN FNRRDIQFSV AAAGATEIHK TDNGGGGIHA PIPAGETNNN GCNELHHSVS NGGGGFDSDS
301: GGGGGAHGGD VNGSSSS

Best Arabidopsis Sequence Match ( AT5G39760.1 )
(BLAST)

001: MMDMTPTITT TTTPTPKSPE PESETPTRIQ PAKPISFSNG IIKRHHHHHH PLLFTYKECL KNHAAALGGH ALDGCGEFMP SPSSISSDPT SLKCAACGCH
101: RNFHRRDPDN NNDSSQIPPP PSTAVEYQPH HRHHPPPPPP PPPPRSPNSA SPPPISSSYM LLSLSGTNNN NNNLASFSDL NFSAGNNHHH HHQHTLHGSR
201: KRFRTKFSQF QKEKMHEFAE RVGWKMQKRD EDDVRDFCRQ IGVDKSVLKV WMHNNKNTFN RRDIAGNEIR QIDNGGGNHT PILAGEINNH NNGHHGVGGG
301: GELHQSVSSG GGGGGFDSDS GGANGGNVNG SSSS

Arabidopsis Description

ZHD10Zinc-finger homeodomain protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.