Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025644.1-P | Field mustard | nucleus | 95.67 | 83.6 |
| CDX74428 | Canola | nucleus | 95.67 | 83.6 |
| AT5G39760.1 | Thale cress | nucleus | 84.48 | 70.06 |
| CDY00104 | Canola | nucleus | 64.98 | 57.69 |
| CDY20008 | Canola | nucleus | 57.76 | 56.94 |
| CDX85230 | Canola | nucleus | 69.31 | 56.64 |
| CDX86403 | Canola | nucleus | 69.31 | 55.81 |
| CDX69541 | Canola | nucleus | 45.49 | 47.91 |
| Solyc02g067310.2.1 | Tomato | nucleus | 48.38 | 45.89 |
| CDX85059 | Canola | nucleus | 39.35 | 45.8 |
| KRH01172 | Soybean | nucleus | 54.87 | 44.97 |
| PGSC0003DMT400035635 | Potato | nucleus | 49.82 | 44.95 |
| KRH18475 | Soybean | nucleus | 53.07 | 44.41 |
| CDX81897 | Canola | mitochondrion | 14.08 | 44.32 |
| Solyc02g067320.1.1 | Tomato | nucleus | 52.35 | 43.81 |
| PGSC0003DMT400034368 | Potato | nucleus | 54.51 | 43.64 |
| CDY26722 | Canola | mitochondrion | 13.72 | 43.18 |
| CDY21695 | Canola | mitochondrion | 13.72 | 43.18 |
| CDY19248 | Canola | mitochondrion | 13.72 | 43.18 |
| CDX83807 | Canola | mitochondrion | 13.72 | 43.18 |
| PGSC0003DMT400017840 | Potato | nucleus | 51.26 | 43.16 |
| CDX96695 | Canola | mitochondrion | 13.0 | 40.91 |
| CDX88760 | Canola | nucleus | 26.35 | 40.33 |
| CDY69628 | Canola | nucleus | 25.99 | 40.22 |
| VIT_14s0108g00750.t01 | Wine grape | nucleus | 51.26 | 40.0 |
| CDX73105 | Canola | mitochondrion | 13.0 | 38.3 |
| CDX96558 | Canola | mitochondrion | 13.0 | 38.3 |
| CDX68172 | Canola | mitochondrion | 13.36 | 38.14 |
| CDX85849 | Canola | mitochondrion | 13.36 | 38.14 |
| CDX95914 | Canola | nucleus | 31.41 | 37.66 |
| KRH40099 | Soybean | nucleus, plastid | 41.88 | 37.66 |
| CDX86404 | Canola | mitochondrion | 12.27 | 37.36 |
| CDX85228 | Canola | mitochondrion, nucleus | 12.27 | 37.36 |
| CDY20009 | Canola | mitochondrion | 12.64 | 35.71 |
| CDY00105 | Canola | mitochondrion | 12.64 | 35.71 |
| CDY01760 | Canola | nucleus | 32.85 | 35.55 |
| CDY28566 | Canola | nucleus | 31.05 | 33.73 |
| CDY44079 | Canola | nucleus | 31.05 | 33.73 |
| CDX77960 | Canola | nucleus | 25.99 | 32.88 |
| CDY08945 | Canola | nucleus | 24.55 | 32.38 |
| CDX73775 | Canola | nucleus | 24.91 | 32.09 |
| CDY24844 | Canola | nucleus | 24.19 | 31.9 |
| CDX88950 | Canola | nucleus | 24.19 | 31.9 |
| CDY03431 | Canola | nucleus | 24.55 | 30.49 |
| CDY54719 | Canola | nucleus | 26.35 | 30.29 |
| CDY34299 | Canola | nucleus | 24.55 | 30.22 |
| CDX90679 | Canola | nucleus | 25.63 | 29.22 |
| CDX81284 | Canola | nucleus | 26.71 | 29.02 |
| CDY37827 | Canola | nucleus | 28.16 | 28.68 |
| CDY33960 | Canola | nucleus | 27.8 | 28.62 |
| CDY28987 | Canola | nucleus | 25.27 | 28.57 |
| CDY37252 | Canola | nucleus | 24.91 | 26.44 |
| CDY14559 | Canola | nucleus | 27.44 | 25.94 |
| CDY62531 | Canola | nucleus | 24.55 | 25.86 |
| CDY09363 | Canola | nucleus | 25.99 | 24.16 |
| CDX85886 | Canola | nucleus | 25.63 | 24.15 |
| CDY41692 | Canola | nucleus | 25.99 | 24.0 |
| CDY45419 | Canola | nucleus | 24.91 | 23.96 |
| CDX68137 | Canola | nucleus | 25.27 | 23.57 |
| CDX73152 | Canola | nucleus | 25.27 | 23.41 |
| CDY53549 | Canola | nucleus | 25.63 | 22.61 |
| CDX81638 | Canola | nucleus | 25.63 | 22.54 |
| CDY45257 | Canola | nucleus | 24.91 | 22.19 |
| CDY70550 | Canola | nucleus | 20.58 | 22.18 |
| CDY71124 | Canola | nucleus | 20.22 | 21.79 |
| CDY39311 | Canola | nucleus | 23.83 | 21.57 |
| CDY70108 | Canola | nucleus | 20.58 | 21.51 |
| CDY46298 | Canola | cytosol | 6.5 | 21.43 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078J1U0 | UniProt:A0A078J1U0 | EnsemblPlants:CDY56033 | ProteinID:CDY56033 |
| ProteinID:CDY56033.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00017701001 |
| InterPro:Homeobox-like_sf | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF47 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EC96FB | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg |
Description
BnaC04g55850DBnaC04g55850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1U0]
Coordinates
chrLK033449:+:51638..52890
Molecular Weight (calculated)
29750.4 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.891
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMTTHTTIT SPPKSPEPEP ETPTRIQPAK PISFSNGIIK RHHHPTLLFT YKECLKNHAA ALGSHALDGC GEFMPSPSLV STDPTSLKCA ACGCHRNFHR
101: REQGNDSSIP PPPSSVAATI EYQPHHRHHP PPPQLPPHPP PRSPNSSSPP PISSSYMLLS LSGTNNNNLA FSGNNHHHQT GSRKRFRTKF SQFQKEKMHE
201: FADRVGWKMQ KRDEDDVREF CHNGGGGILA PIPAGETNNN GGNELHHSVS NGGGGFDSDS GGGGGAHGGN VNGSSSS
101: REQGNDSSIP PPPSSVAATI EYQPHHRHHP PPPQLPPHPP PRSPNSSSPP PISSSYMLLS LSGTNNNNLA FSGNNHHHQT GSRKRFRTKF SQFQKEKMHE
201: FADRVGWKMQ KRDEDDVREF CHNGGGGILA PIPAGETNNN GGNELHHSVS NGGGGFDSDS GGGGGAHGGN VNGSSSS
001: MLEVRSMDMT PKSPEPESET PTRIQPAKPI SFSNGIIKRH HHHHHNNNKV TYKECLKNHA AAIGGHALDG CGEFMPSPSS TPSDPTSLKC AACGCHRNFH
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
101: RRETDDSSAV PPPSLLPSST TTAAIEYQPH HRHHPPPPLA PPLPRSPNSS SPPPISSSYM LLALSGNNKT APFSDLNFAA AANHLSATPG SRKRFRTKFS
201: SNQKEKMHEF ADRIGWKIQK RDEDEVRDFC REIGVDKGVL KVWMHNNKNS FKFSGGGATT VQRNDNGIGG ENSNDDGVRG LANDGDGGGG RFESDSGGAD
301: GGGNVNASSS SS
Arabidopsis Description
ZHD9Zinc-finger homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.