Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34299 | Canola | nucleus | 95.07 | 94.22 |
| CDY08945 | Canola | nucleus | 84.3 | 89.52 |
| CDX88950 | Canola | nucleus | 83.86 | 89.05 |
| CDY24844 | Canola | nucleus | 82.51 | 87.62 |
| AT4G24660.2 | Thale cress | nucleus | 87.44 | 84.42 |
| CDY21695 | Canola | mitochondrion | 20.63 | 52.27 |
| CDX81897 | Canola | mitochondrion | 20.18 | 51.14 |
| CDX83807 | Canola | mitochondrion | 19.73 | 50.0 |
| CDY26722 | Canola | mitochondrion | 19.28 | 48.86 |
| CDY19248 | Canola | mitochondrion | 19.28 | 48.86 |
| CDX96695 | Canola | mitochondrion | 18.83 | 47.73 |
| CDX86404 | Canola | mitochondrion | 19.28 | 47.25 |
| CDX85228 | Canola | mitochondrion, nucleus | 19.28 | 47.25 |
| CDX73105 | Canola | mitochondrion | 19.73 | 46.81 |
| CDX96558 | Canola | mitochondrion | 19.28 | 45.74 |
| CDX68172 | Canola | mitochondrion | 19.73 | 45.36 |
| CDX85849 | Canola | mitochondrion | 19.73 | 45.36 |
| CDX81284 | Canola | nucleus | 47.98 | 41.96 |
| CDY54719 | Canola | nucleus | 45.29 | 41.91 |
| CDY20009 | Canola | mitochondrion | 18.39 | 41.84 |
| CDY00105 | Canola | mitochondrion | 18.39 | 41.84 |
| CDX77960 | Canola | nucleus | 38.12 | 38.81 |
| CDX73775 | Canola | nucleus | 37.22 | 38.6 |
| CDY33960 | Canola | nucleus | 46.19 | 38.29 |
| CDY37827 | Canola | nucleus | 46.64 | 38.24 |
| CDX88760 | Canola | nucleus | 30.04 | 37.02 |
| CDY69628 | Canola | nucleus | 29.6 | 36.87 |
| CDY14559 | Canola | nucleus | 48.43 | 36.86 |
| CDY37252 | Canola | nucleus | 41.7 | 35.63 |
| CDX95914 | Canola | nucleus | 36.77 | 35.5 |
| CDY62531 | Canola | nucleus | 41.7 | 35.36 |
| CDX90679 | Canola | nucleus | 37.67 | 34.57 |
| CDY28987 | Canola | nucleus | 36.32 | 33.06 |
| CDX85886 | Canola | nucleus | 43.05 | 32.65 |
| CDY45419 | Canola | nucleus | 42.15 | 32.64 |
| CDY44079 | Canola | nucleus | 37.22 | 32.55 |
| CDY28566 | Canola | nucleus | 37.22 | 32.55 |
| CDY01760 | Canola | nucleus | 37.22 | 32.42 |
| CDX68137 | Canola | nucleus | 42.6 | 31.99 |
| CDX73152 | Canola | nucleus | 42.15 | 31.44 |
| CDY70550 | Canola | nucleus | 35.87 | 31.13 |
| CDY09363 | Canola | nucleus | 41.26 | 30.87 |
| CDY41692 | Canola | nucleus | 40.81 | 30.33 |
| CDY53549 | Canola | nucleus | 42.6 | 30.25 |
| CDY70108 | Canola | nucleus | 35.87 | 30.19 |
| CDX81638 | Canola | nucleus | 42.6 | 30.16 |
| CDY45257 | Canola | nucleus | 41.7 | 29.9 |
| CDX69541 | Canola | nucleus | 34.53 | 29.28 |
| CDY20008 | Canola | nucleus | 36.77 | 29.18 |
| CDY71124 | Canola | nucleus | 33.18 | 28.79 |
| CDY39311 | Canola | nucleus | 39.46 | 28.76 |
| CDY00104 | Canola | nucleus | 37.22 | 26.6 |
| CDX74428 | Canola | nucleus | 35.87 | 25.24 |
| CDX85059 | Canola | nucleus | 26.91 | 25.21 |
| CDX85230 | Canola | nucleus | 37.67 | 24.78 |
| CDY56033 | Canola | nucleus | 30.49 | 24.55 |
| CDY46298 | Canola | cytosol | 8.97 | 23.81 |
| CDX86403 | Canola | nucleus | 36.32 | 23.55 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078EQE8 | EnsemblPlants:CDY03431 | ProteinID:CDY03431 | ProteinID:CDY03431.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00116082001 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF5 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EDD77D | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g16510D
Coordinates
chrLK031943:+:414770..415618
Molecular Weight (calculated)
24132.3 Da
IEP (calculated)
8.485
GRAVY (calculated)
-0.838
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFEGQEEEM EMSGVNPAGG YDSPSGEGAT SSGGGGGGSR KSVGGSKIRY RECLKNHAVN IGGHAVDGCC EFMPSGEDGS LDALKCAACG CHRNFHRKET
101: EIMSGRAHRA PTYYNRPPQL PLPGYLHLTS PAAAGQPYRP PASGDEEDTS NPSSSGGTRA KRFRTKFTAE QKEKMLAFAE RLGWRIQKHD DAAVEQFCAE
201: TGVRRQVLKI WMHNNKNSLG KKP
101: EIMSGRAHRA PTYYNRPPQL PLPGYLHLTS PAAAGQPYRP PASGDEEDTS NPSSSGGTRA KRFRTKFTAE QKEKMLAFAE RLGWRIQKHD DAAVEQFCAE
201: TGVRRQVLKI WMHNNKNSLG KKP
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP
Arabidopsis Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.