Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03431 | Canola | nucleus | 84.42 | 87.44 |
| Bra013822.1-P | Field mustard | nucleus | 84.85 | 87.11 |
| CDY34299 | Canola | nucleus | 84.42 | 86.67 |
| CDY08945 | Canola | nucleus | 78.36 | 86.19 |
| CDX88950 | Canola | nucleus | 78.36 | 86.19 |
| CDY24844 | Canola | nucleus | 77.06 | 84.76 |
| Bra010485.1-P | Field mustard | nucleus | 76.62 | 84.29 |
| AT1G18835.1 | Thale cress | mitochondrion | 18.61 | 48.86 |
| AT1G74660.1 | Thale cress | mitochondrion | 19.48 | 44.12 |
| AT3G28917.1 | Thale cress | mitochondrion | 18.61 | 43.0 |
| AT5G65410.1 | Thale cress | nucleus | 45.45 | 37.63 |
| AT3G50890.1 | Thale cress | nucleus | 36.36 | 33.73 |
| AT1G69600.1 | Thale cress | nucleus | 35.06 | 33.47 |
| AT2G18350.1 | Thale cress | nucleus | 37.66 | 33.21 |
| AT5G60480.1 | Thale cress | nucleus | 31.6 | 32.74 |
| AT2G02540.2 | Thale cress | nucleus | 41.56 | 30.97 |
| AT1G14440.1 | Thale cress | nucleus | 41.56 | 30.77 |
| AT5G15210.1 | Thale cress | nucleus | 35.5 | 30.26 |
| AT1G75240.1 | Thale cress | nucleus | 39.83 | 29.77 |
| AT3G28920.1 | Thale cress | nucleus | 37.66 | 27.88 |
| AT5G42780.1 | Thale cress | nucleus | 29.0 | 27.69 |
| AT5G39760.1 | Thale cress | nucleus | 35.93 | 24.85 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:828568 | UniProt:A0A1P8B5J0 | ProteinID:ANM66847.1 | ArrayExpress:AT4G24660 |
| EnsemblPlantsGene:AT4G24660 | RefSeq:AT4G24660 | TAIR:AT4G24660 | RefSeq:AT4G24660-TAIR-G | EnsemblPlants:AT4G24660.2 | Symbol:ATHB22 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD |
| InterPro:IPR006456 | RefSeq:NP_001328716.1 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF5 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0008495CDB | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| SEG:seg | : | : | : | : | : |
Description
ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
Coordinates
chr4:-:12722912..12725637
Molecular Weight (calculated)
25367.6 Da
IEP (calculated)
7.525
GRAVY (calculated)
-0.826
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLDGYQ VFKRYEATSA H
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.