Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90679 | Canola | nucleus | 76.31 | 78.19 |
| CDY28987 | Canola | nucleus | 76.71 | 77.96 |
| CDX77960 | Canola | nucleus | 63.45 | 72.15 |
| Bra036852.1-P | Field mustard | nucleus | 63.45 | 72.15 |
| CDX73775 | Canola | nucleus | 61.45 | 71.16 |
| Bra012882.1-P | Field mustard | nucleus | 69.88 | 65.66 |
| AT1G18835.1 | Thale cress | mitochondrion | 15.66 | 44.32 |
| AT3G28917.1 | Thale cress | mitochondrion | 17.27 | 43.0 |
| AT1G74660.1 | Thale cress | mitochondrion | 16.87 | 41.18 |
| AT4G24660.2 | Thale cress | nucleus | 33.73 | 36.36 |
| AT2G18350.1 | Thale cress | nucleus | 34.94 | 33.21 |
| TraesCS1A01G418600.1 | Wheat | nucleus | 29.72 | 32.89 |
| HORVU1Hr1G091470.1 | Barley | nucleus | 30.52 | 32.34 |
| Zm00001d009674_P001 | Maize | nucleus | 30.92 | 32.22 |
| Os05t0579300-01 | Rice | nucleus | 32.93 | 32.16 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 29.32 | 31.47 |
| PGSC0003DMT400009581 | Potato | nucleus | 35.74 | 31.34 |
| Solyc04g080490.2.1 | Tomato | nucleus | 35.74 | 30.69 |
| TraesCS3A01G226100.1 | Wheat | nucleus | 28.92 | 30.64 |
| AT5G15210.1 | Thale cress | nucleus | 33.33 | 30.63 |
| Os01t0635550-00 | Rice | nucleus | 28.51 | 30.6 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 28.92 | 30.51 |
| AT5G65410.1 | Thale cress | nucleus | 33.73 | 30.11 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 30.12 | 29.76 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 29.72 | 29.6 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 33.33 | 29.33 |
| AT5G60480.1 | Thale cress | nucleus | 26.1 | 29.15 |
| AT1G69600.1 | Thale cress | nucleus | 28.11 | 28.93 |
| VIT_18s0001g12580.t01 | Wine grape | nucleus | 36.14 | 28.48 |
| AT1G75240.1 | Thale cress | nucleus | 34.14 | 27.51 |
| GSMUA_Achr10P... | Banana | nucleus | 28.92 | 27.17 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 31.33 | 26.8 |
| AT5G39760.1 | Thale cress | nucleus | 34.94 | 26.05 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 33.33 | 25.86 |
| AT3G28920.1 | Thale cress | nucleus | 32.13 | 25.64 |
| AT1G14440.1 | Thale cress | nucleus | 31.73 | 25.32 |
| AT5G42780.1 | Thale cress | nucleus | 24.5 | 25.21 |
| AT2G02540.2 | Thale cress | nucleus | 31.33 | 25.16 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 32.93 | 23.63 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 30.92 | 23.33 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 30.92 | 23.26 |
| OQU78488 | Sorghum | plastid | 32.93 | 21.98 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 32.93 | 21.35 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 18.88 | 21.08 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 32.93 | 20.6 |
| Zm00001d017784_P001 | Maize | nucleus | 31.73 | 18.94 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 18.07 | 18.75 |
| Os02t0706600-00 | Rice | nucleus | 32.13 | 18.74 |
| KXG30914 | Sorghum | nucleus | 30.52 | 18.72 |
| Zm00001d051573_P001 | Maize | nucleus | 32.53 | 18.16 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 32.93 | 17.79 |
| TraesCS6A01G273700.1 | Wheat | nucleus | 32.53 | 17.42 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 32.53 | 17.42 |
| HORVU6Hr1G069090.1 | Barley | nucleus | 28.92 | 15.62 |
| HORVU6Hr1G069070.1 | Barley | plastid | 10.84 | 9.61 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:824253 | UniProt:A0A178VL56 | ProteinID:AEE78722.1 | EMBL:AK175649 |
| ArrayExpress:AT3G50890 | EnsemblPlantsGene:AT3G50890 | RefSeq:AT3G50890 | TAIR:AT3G50890 | RefSeq:AT3G50890-TAIR-G | EnsemblPlants:AT3G50890.1 |
| TAIR:AT3G50890.1 | EMBL:AY086020 | Symbol:AtHB28 | ProteinID:CAB42918.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042803 | GO:GO:0046872 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:Homeodomain_ZF_HD | InterPro:IPR001356 | InterPro:IPR006456 | RefSeq:NP_190658.1 | ProteinID:OAP07079.1 |
| PFAM:PD125774 | PFAM:PF04770 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 |
| PFscan:PS50071 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF9 | UniProt:Q9SVL0 | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI00000AB734 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : |
Description
ZHD7ZHD7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL56]
Coordinates
chr3:+:18916014..18917386
Molecular Weight (calculated)
28659.5 Da
IEP (calculated)
10.127
GRAVY (calculated)
-1.038
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MELGGKCNAI TTTTMISTEV KPHTDPEPEA KPESDPSMAL FPIKKENQKP KTRVDQGAKY RECQKNHAAS TGGHVVDGCC EFMAGGEEGT LGALKCAACN
101: CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA
201: ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE
101: CHRSFHRKEV YGHRNSKQDH QLMITPAFYS SNSSYKPRVM HPTGEIGRRT SSSSEDMKKI LSHRNQNVDG KSLMMMMMRK KKRVRTKINE EQKEKMKEFA
201: ERLGWRMQKK DEEEIDKFCR MVNLRRQVFK VWMHNNKQAM KRNNSNISE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.