Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81638 | Canola | nucleus | 89.74 | 88.89 |
| CDY53549 | Canola | nucleus | 89.1 | 88.53 |
| Bra026830.1-P | Field mustard | nucleus | 89.1 | 88.53 |
| CDY45257 | Canola | nucleus | 86.86 | 87.14 |
| Bra026219.1-P | Field mustard | nucleus | 85.58 | 86.13 |
| CDY39311 | Canola | nucleus | 83.33 | 84.97 |
| AT2G02540.2 | Thale cress | nucleus | 62.5 | 62.9 |
| GSMUA_Achr6P28870_001 | Banana | nucleus | 38.46 | 53.1 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 38.14 | 52.65 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 33.97 | 51.21 |
| VIT_12s0035g01880.t01 | Wine grape | nucleus | 45.51 | 50.53 |
| GSMUA_Achr9P08090_001 | Banana | nucleus | 38.14 | 49.38 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 36.54 | 48.93 |
| GSMUA_Achr10P... | Banana | nucleus | 37.82 | 48.76 |
| KRH51275 | Soybean | nucleus | 42.63 | 47.0 |
| AT1G18835.1 | Thale cress | mitochondrion | 13.14 | 46.59 |
| KRH01880 | Soybean | nucleus | 42.31 | 46.15 |
| PGSC0003DMT400053397 | Potato | nucleus | 41.35 | 44.95 |
| Solyc01g102980.2.1 | Tomato | nucleus | 41.67 | 44.83 |
| AT4G24660.2 | Thale cress | nucleus | 30.77 | 41.56 |
| AT3G28917.1 | Thale cress | mitochondrion | 13.14 | 41.0 |
| AT1G74660.1 | Thale cress | mitochondrion | 13.14 | 40.2 |
| AT1G69600.1 | Thale cress | nucleus | 26.6 | 34.3 |
| AT5G65410.1 | Thale cress | nucleus | 30.13 | 33.69 |
| AT2G18350.1 | Thale cress | nucleus | 27.88 | 33.21 |
| AT1G75240.1 | Thale cress | nucleus | 31.73 | 32.04 |
| AT5G60480.1 | Thale cress | nucleus | 22.76 | 31.84 |
| AT3G50890.1 | Thale cress | nucleus | 25.32 | 31.73 |
| KXG23238 | Sorghum | nucleus | 33.01 | 31.4 |
| AT5G15210.1 | Thale cress | nucleus | 26.6 | 30.63 |
| Zm00001d041780_P001 | Maize | nucleus | 33.01 | 29.51 |
| KXG28111 | Sorghum | nucleus | 37.18 | 29.44 |
| TraesCS4D01G086300.1 | Wheat | nucleus | 36.54 | 29.31 |
| AT5G42780.1 | Thale cress | nucleus | 22.44 | 28.93 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 36.54 | 28.72 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 36.54 | 28.43 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 37.5 | 28.06 |
| AT3G28920.1 | Thale cress | nucleus | 27.88 | 27.88 |
| Zm00001d049000_P001 | Maize | plastid | 37.18 | 27.62 |
| Os12t0208900-00 | Rice | nucleus | 19.55 | 27.48 |
| HORVU4Hr1G015250.6 | Barley | nucleus, plastid | 36.54 | 27.14 |
| AT5G39760.1 | Thale cress | nucleus | 28.53 | 26.65 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | EntrezGene:838006 | UniProt:A0A178W768 | ProteinID:AAF43944.1 | EMBL:AB493456 |
| ProteinID:AEE29163.1 | ProteinID:AEE29164.1 | ArrayExpress:AT1G14440 | EnsemblPlantsGene:AT1G14440 | RefSeq:AT1G14440 | TAIR:AT1G14440 |
| RefSeq:AT1G14440-TAIR-G | EnsemblPlants:AT1G14440.1 | TAIR:AT1G14440.1 | EMBL:AY074266 | EMBL:AY096738 | Symbol:AtHB31 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0042803 | GO:GO:0046872 | GO:GO:0048574 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | RefSeq:NP_172896.1 | RefSeq:NP_973826.1 | ProteinID:OAP14168.1 | PFAM:PD125774 |
| PFAM:PF04770 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0020148 |
| PO:PO:0025022 | PFscan:PS51523 | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF19 | UniProt:Q9M9S0 | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI00000ABA34 | InterPro:ZF_HD_homeobox_Cys/His_dimer | SEG:seg | : |
Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
Coordinates
chr1:-:4938754..4941332
Molecular Weight (calculated)
35483.9 Da
IEP (calculated)
7.626
GRAVY (calculated)
-0.955
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.