Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P08090_001 | Banana | nucleus | 87.17 | 81.74 |
| GSMUA_Achr1P13300_001 | Banana | nucleus | 79.65 | 79.65 |
| GSMUA_Achr10P... | Banana | nucleus | 80.97 | 75.62 |
| GSMUA_Achr3P16680_001 | Banana | nucleus | 76.99 | 74.68 |
| GSMUA_Achr6P17420_001 | Banana | nucleus | 66.37 | 72.46 |
| GSMUA_Achr7P19060_001 | Banana | nucleus | 45.13 | 49.51 |
| VIT_12s0035g01880.t01 | Wine grape | nucleus | 60.62 | 48.75 |
| KRH51275 | Soybean | nucleus | 59.29 | 47.35 |
| GSMUA_Achr3P20390_001 | Banana | nucleus | 42.92 | 46.86 |
| KRH01880 | Soybean | nucleus | 56.64 | 44.76 |
| PGSC0003DMT400053397 | Potato | nucleus | 56.64 | 44.6 |
| Solyc01g102980.2.1 | Tomato | nucleus | 56.64 | 44.14 |
| GSMUA_Achr10P... | Banana | nucleus | 43.81 | 43.23 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.26 | 41.94 |
| GSMUA_Achr5P05500_001 | Banana | nucleus | 43.36 | 41.18 |
| GSMUA_Achr6P30650_001 | Banana | mitochondrion | 17.26 | 41.05 |
| GSMUA_Achr6P02170_001 | Banana | nucleus | 41.59 | 40.69 |
| CDY53549 | Canola | nucleus | 53.98 | 38.85 |
| Bra026830.1-P | Field mustard | nucleus | 53.98 | 38.85 |
| CDX81638 | Canola | nucleus | 53.98 | 38.73 |
| AT1G14440.1 | Thale cress | nucleus | 53.1 | 38.46 |
| AT2G02540.2 | Thale cress | nucleus | 52.65 | 38.39 |
| Bra026589.1-P | Field mustard | nucleus | 50.88 | 38.33 |
| CDY09363 | Canola | nucleus | 50.44 | 38.26 |
| Bra026219.1-P | Field mustard | nucleus | 52.21 | 38.06 |
| CDY41692 | Canola | nucleus | 50.44 | 38.0 |
| CDY45257 | Canola | nucleus | 51.77 | 37.62 |
| KXG23238 | Sorghum | nucleus | 53.54 | 36.89 |
| CDY39311 | Canola | nucleus | 49.56 | 36.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.27 | 36.4 |
| TraesCS4D01G086300.1 | Wheat | nucleus | 60.62 | 35.22 |
| KXG28111 | Sorghum | nucleus | 61.06 | 35.03 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 60.62 | 34.51 |
| TraesCS4A01G226800.1 | Wheat | nucleus | 60.62 | 34.16 |
| Zm00001d041780_P001 | Maize | nucleus | 52.21 | 33.81 |
| Zm00001d049000_P001 | Maize | plastid | 61.5 | 33.1 |
| Os11t0243300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 61.06 | 33.09 |
| GSMUA_Achr10P... | Banana | nucleus | 38.5 | 32.83 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 34.51 | 32.77 |
| GSMUA_Achr3P31090_001 | Banana | nucleus | 40.27 | 32.16 |
| Os12t0208900-00 | Rice | nucleus | 31.42 | 31.98 |
| HORVU4Hr1G015250.6 | Barley | nucleus, plastid | 59.29 | 31.9 |
| GSMUA_Achr2P23010_001 | Banana | nucleus | 40.71 | 31.62 |
| GSMUA_Achr8P27010_001 | Banana | nucleus | 43.36 | 30.53 |
| GSMUA_Achr4P07850_001 | Banana | nucleus | 44.25 | 30.21 |
| GSMUA_Achr10P... | Banana | nucleus | 33.63 | 29.12 |
| GSMUA_Achr7P25600_001 | Banana | nucleus | 43.81 | 28.53 |
| GSMUA_Achr4P14910_001 | Banana | nucleus | 39.82 | 27.27 |
| GSMUA_Achr6P27240_001 | Banana | plastid | 44.69 | 26.3 |
| GSMUA_Achr6P22120_001 | Banana | nucleus | 44.25 | 25.13 |
| GSMUA_Achr6P24230_001 | Banana | nucleus | 23.89 | 24.22 |
| GSMUA_Achr3P19060_001 | Banana | nucleus | 25.22 | 23.75 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P28870_001 | EnsemblPlants:GSMUA_Achr6T28870_001 | EnsemblPlantsGene:GSMUA_Achr6G28870_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| PANTHER:PTHR31948 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI000295DEE5 | UniProt:M0TB32 | MapMan:15.5.3.13 | : |
Description
Putative ZF-HD protein dimerisation region containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G28870_001]
Coordinates
chr6:+:29164287..29165102
Molecular Weight (calculated)
25148.2 Da
IEP (calculated)
8.407
GRAVY (calculated)
-0.782
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSGHEGEI PIPITSAYVG GHGQTNMRDT PPIHHPSNGP PPPPPPLPIA TTEDHQRHHH ATNSHSTKKG VAVRYRECLK NHAASIGGNA TDGCGEFMPS
101: GEEGSLEALK CSACGCHRNF HRKETEGDMI MPLGAIQTSE SDEMEGVGGM MPRPLMVKKR FRTKFTPEQK EKMLSFAEKV GWKLQKQEES VVQQFCQEIG
201: VKRRVLKVWM HNNKHHLAKK NPLQLE
101: GEEGSLEALK CSACGCHRNF HRKETEGDMI MPLGAIQTSE SDEMEGVGGM MPRPLMVKKR FRTKFTPEQK EKMLSFAEKV GWKLQKQEES VVQQFCQEIG
201: VKRRVLKVWM HNNKHHLAKK NPLQLE
001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP
Arabidopsis Description
ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.