Factsheet for GSMUA_Achr10P20470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P13300_001
GSMUA_Achr2P23010_001
GSMUA_Achr3P16680_001
GSMUA_Achr3P19060_001
GSMUA_Achr3P20390_001
GSMUA_Achr3P31090_001
GSMUA_Achr4P07850_001
GSMUA_Achr4P14910_001
GSMUA_Achr5P05500_001
GSMUA_Achr6P02170_001
GSMUA_Achr6P02700_001
GSMUA_Achr6P17420_001
GSMUA_Achr6P22120_001
GSMUA_Achr6P24230_001
GSMUA_Achr6P27240_001
GSMUA_Achr6P28870_001
GSMUA_Achr7P19060_001
GSMUA_Achr7P25600_001
GSMUA_Achr8P27010_001
GSMUA_Achr9P08090_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_AchrUn_...	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P23010_001	Banana	nucleus	70.19	63.92
GSMUA_Achr7P19060_001	Banana	nucleus	33.21	42.72
GSMUA_Achr3P20390_001	Banana	nucleus	31.7	40.58
GSMUA_Achr10P...	Banana	nucleus	34.72	40.17
GSMUA_Achr3P31090_001	Banana	nucleus	42.64	39.93
GSMUA_Achr6P17420_001	Banana	nucleus	30.94	39.61
GSMUA_Achr6P28870_001	Banana	nucleus	32.83	38.5
GSMUA_AchrUn_...	Banana	cytosol	12.83	36.56
GSMUA_Achr5P05500_001	Banana	nucleus	32.83	36.55
GSMUA_Achr8P27010_001	Banana	nucleus	43.77	36.14
GSMUA_Achr1P13300_001	Banana	nucleus	30.57	35.84
GSMUA_Achr3P16680_001	Banana	nucleus	31.32	35.62
GSMUA_Achr6P02170_001	Banana	nucleus	30.94	35.5
GSMUA_Achr9P08090_001	Banana	nucleus	32.08	35.27
GSMUA_Achr4P07850_001	Banana	nucleus	43.77	35.05
GSMUA_Achr7P25600_001	Banana	nucleus	45.66	34.87
GSMUA_Achr10P...	Banana	nucleus	30.94	33.88
GSMUA_Achr6P30650_001	Banana	mitochondrion	12.08	33.68
GSMUA_AchrUn_...	Banana	nucleus	31.7	33.6
CDX73775	Canola	nucleus	26.42	32.56
CDX77960	Canola	nucleus	26.42	31.96
Bra036852.1-P	Field mustard	nucleus	26.42	31.96
GSMUA_Achr6P02700_001	Banana	nucleus	27.17	30.25
GSMUA_Achr6P22120_001	Banana	nucleus	44.91	29.9
CDY37252	Canola	nucleus	29.06	29.5
GSMUA_Achr6P27240_001	Banana	plastid	42.64	29.43
CDY62531	Canola	nucleus	29.06	29.28
CDY70550	Canola	nucleus	28.3	29.18
GSMUA_Achr4P14910_001	Banana	nucleus	36.23	29.09
AT3G50890.1	Thale cress	nucleus	27.17	28.92
PGSC0003DMT400009581	Potato	nucleus	30.94	28.87
CDX90679	Canola	nucleus	26.04	28.4
CDY70108	Canola	nucleus	28.3	28.3
Solyc04g080490.2.1	Tomato	nucleus	30.94	28.28
AT2G18350.1	Thale cress	nucleus	27.92	28.24
Bra037224.1-P	Field mustard	nucleus	27.92	27.92
CDY45419	Canola	nucleus	29.81	27.43
CDX68137	Canola	nucleus	30.57	27.27
CDY71124	Canola	nucleus	26.42	27.24
CDX85886	Canola	nucleus	30.19	27.21
Bra003759.1-P	Field mustard	nucleus	30.19	27.21
Zm00001d017784_P001	Maize	nucleus	42.64	27.1
CDY28987	Canola	nucleus	24.91	26.94
Os02t0706600-00	Rice	nucleus	43.4	26.93
Bra008185.1-P	Field mustard	nucleus	29.81	26.87
Bra015857.1-P	Field mustard	nucleus	30.57	26.82
GSMUA_Achr10P...	Banana	nucleus	26.42	26.82
CDX73152	Canola	nucleus	30.19	26.76
VIT_18s0001g12580.t01	Wine grape	nucleus	31.7	26.58
KRH76785	Soybean	nucleus	31.32	26.18
Solyc02g085160.1.1	Tomato	nucleus	27.92	25.26
AT1G75240.1	Thale cress	nucleus	29.43	25.24
Zm00001d051573_P001	Maize	nucleus	42.26	25.11
KXG30914	Sorghum	nucleus	38.11	24.88
KRH08258	Soybean	nucleus	30.57	24.62
KRH28682	Soybean	nucleus	30.94	24.4
KRH69909	Soybean	nucleus	30.57	24.25
PGSC0003DMT400009033	Potato	nucleus	27.17	23.84
GSMUA_Achr6P24230_001	Banana	nucleus	20.0	23.77
TraesCS6D01G253700.1	Wheat	nucleus	41.51	23.66
TraesCS6B01G301000.1	Wheat	nucleus	41.13	23.64
TraesCS6A01G273700.1	Wheat	nucleus	41.13	23.44
Bra012882.1-P	Field mustard	nucleus	23.02	23.02
GSMUA_Achr3P19060_001	Banana	nucleus	20.38	22.5
HORVU6Hr1G069090.1	Barley	nucleus	35.47	20.39
VIT_04s0023g01880.t01	Wine grape	nucleus	30.94	18.94
HORVU6Hr1G069070.1	Barley	plastid	18.49	17.44

Protein Annotations

EnsemblPlants:GSMUA_Achr10P20470_001	EnsemblPlants:GSMUA_Achr10T20470_001	EnsemblPlantsGene:GSMUA_Achr10G20470_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer
PANTHER:PTHR31948	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI0002957163	UniProt:M0RJX2	MapMan:15.5.3.13	:

Description

ATHB22/MEE68 [Source:GMGC_GENE;Acc:GSMUA_Achr10G20470_001]

Coordinates

chr10:+:26437449..26438387

Molecular Weight (calculated)

28851.5 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.800

Length

265 amino acids

Sequence
(BLAST)

001: MEFRRQEQEE VYNPTPLQQS AFTRPLPSSS TSLLYVRGGG REGAGDARNG LGSLIQKPTP ISAAPAVSGA LGGGGGGNRT HSTAAAAAIA ATESDTALRY
101: RECLRNHAAS LGGHILDGCC EFMPRSDDAL RCAACGCHRS FHRKDNETDC ALCDLQNGTH GRPSGLLLHA GNSAGASKRF RTKFTAEQKE SMLAFAETVG
201: WKMQKQDDAA VQQFCRDVGV SRQVLKVWMH NNKNSSRKQQ QQQPPPQQEE EEDEEEQPQH EMPED

Best Arabidopsis Sequence Match ( AT4G24660.1 )
(BLAST)

001: MNFEDQEEDM EMSGVNPPCG YDSLSGEGAT SSGGGGVGRS KGVGAKIRYR ECLKNHAVNI GGHAVDGCCE FMPSGEDGTL DALKCAACGC HRNFHRKETE
101: SIGGRAHRVP TYYNRPPQPH QPPGYLHLTS PAAPYRPPAA SGDEEDTSNP SSSGGTTKRF RTKFTAEQKE KMLAFAERLG WRIQKHDDVA VEQFCAETGV
201: RRQVLKIWMH NNKNSLGKKP

Arabidopsis Description

ATHB22homeobox protein 22 [Source:TAIR;Acc:AT4G24660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.