Factsheet for Solyc02g085160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009033	Potato	nucleus	96.59	93.71
Solyc04g074990.2.1	Tomato	nucleus	22.53	46.15
Solyc05g051420.1.1	Tomato	nucleus	25.94	45.51
Solyc03g116070.1.1	Tomato	mitochondrion	11.95	42.17
Solyc03g098060.1.1	Tomato	nucleus	25.26	41.34
Solyc03g061620.1.1	Tomato	cytosol	11.95	39.77
Solyc02g087970.1.1	Tomato	mitochondrion	11.95	38.89
Solyc02g067330.1.1	Tomato	cytosol, nucleus, plastid	12.29	35.29
Solyc04g080490.2.1	Tomato	nucleus	33.45	33.79
TraesCS1A01G418600.1	Wheat	nucleus	25.6	33.33
Solyc04g014260.1.1	Tomato	nucleus	27.99	33.2
Zm00001d009674_P001	Maize	nucleus	26.62	32.64
Os05t0579300-01	Rice	nucleus	28.33	32.55
TraesCS3B01G258400.1	Wheat	nucleus	25.6	32.33
HORVU1Hr1G091470.1	Barley	nucleus	25.6	31.91
TraesCS3A01G226100.1	Wheat	nucleus	25.26	31.49
Os01t0635550-00	Rice	nucleus	24.91	31.47
Solyc01g102980.2.1	Tomato	nucleus	31.06	31.38
TraesCS3D01G224100.1	Wheat	nucleus	25.26	31.36
KRH08258	Soybean	nucleus	34.81	31.0
KRH69909	Soybean	nucleus	35.15	30.84
TraesCS1B01G448600.1	Wheat	nucleus	26.28	30.56
TraesCS1D01G426300.1	Wheat	nucleus	25.6	30.0
GSMUA_Achr2P23010_001	Banana	nucleus	29.35	29.55
Solyc01g103820.1.1	Tomato	cytosol	9.22	28.72
Solyc02g067310.2.1	Tomato	nucleus	27.99	28.08
KRH76785	Soybean	nucleus	30.38	28.08
GSMUA_Achr10P...	Banana	nucleus	25.26	27.92
GSMUA_Achr3P31090_001	Banana	nucleus	26.96	27.92
GSMUA_Achr8P27010_001	Banana	nucleus	29.35	26.79
KRH28682	Soybean	nucleus	30.72	26.79
Solyc05g007580.1.1	Tomato	nucleus	26.96	26.6
Solyc05g018740.1.1	Tomato	cytosol	10.58	26.05
Solyc02g067320.1.1	Tomato	nucleus	28.67	25.38
Solyc05g020000.1.1	Tomato	cytosol	10.24	25.21
Solyc01g103810.1.1	Tomato	cytosol	9.9	25.0
GSMUA_Achr7P25600_001	Banana	nucleus	28.33	23.92
GSMUA_Achr4P14910_001	Banana	nucleus	26.62	23.64
GSMUA_Achr4P07850_001	Banana	nucleus	25.94	22.96
VIT_04s0023g01880.t01	Wine grape	nucleus	33.79	22.86
GSMUA_Achr6P27240_001	Banana	plastid	29.35	22.4
OQU78488	Sorghum	plastid	27.99	21.98
GSMUA_Achr6P22120_001	Banana	nucleus	29.69	21.86
KXG30914	Sorghum	nucleus	27.3	19.7
Os02t0706600-00	Rice	nucleus	27.99	19.2
Zm00001d017784_P001	Maize	nucleus	27.3	19.18
Zm00001d051573_P001	Maize	nucleus	28.33	18.61
GSMUA_Achr6P24230_001	Banana	nucleus	13.99	18.39
TraesCS6B01G301000.1	Wheat	nucleus	28.33	18.0
GSMUA_Achr3P19060_001	Banana	nucleus	14.68	17.92
TraesCS6A01G273700.1	Wheat	nucleus	28.33	17.85
TraesCS6D01G253700.1	Wheat	nucleus	28.33	17.85
HORVU6Hr1G069090.1	Barley	nucleus	26.62	16.92
HORVU6Hr1G069070.1	Barley	plastid	10.24	10.68
Solyc09g089550.2.1	Tomato	nucleus	18.77	6.83

Protein Annotations

EnsemblPlants:Solyc02g085160.1.1	EnsemblPlantsGene:Solyc02g085160.1	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PANTHER:PTHR31948:SF9	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SUPFAM:SSF46689	TIGRFAMs:TIGR01565
TIGRFAMs:TIGR01566	UniParc:UPI0002769044	UniProt:K4BB30	MapMan:15.5.3.13	:	:

Description

No Description!

Coordinates

chr2:-:48141575..48142456

Molecular Weight (calculated)

33314.8 Da

IEP (calculated)

8.113

GRAVY (calculated)

-1.103

Length

293 amino acids

Sequence
(BLAST)

001: MEHRGQEKDM GLPNPNPMSY NPSQLNQQES SSSAANKFLT APNRTTNEHE NTIFSPNQTL DQHNITQNSD PDPVRQLSTS SASERNITPV RYKECLKNHA
101: ANLGGYVLDG CGEFMPSGEE ETLEYLKCAA CDCHRNFHRK ETEDESQTPG VHRNNHRIPN QTPPSLPAVP TQQQHHHKYP HSYPRGHMAP VMMSFGGNTG
201: VAAESSSEDL NMFHGGQGVI QPCNFSASKK RFRTKFSQQQ KDRMLEFAEK LGWRIQKQDE QEVHQFCNEV GVKRQVFKVW MHNSKQATKK KQN

Best Arabidopsis Sequence Match ( AT1G75240.1 )
(BLAST)

001: MDMRSHEMIE RRREDNGNNN GGVVISNIIS TNIDDNCNGN NNNTRVSCNS QTLDHHQSKS PSSFSISAAA KPTVRYRECL KNHAASVGGS VHDGCGEFMP
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL

Arabidopsis Description

ZHD5ZHD5 [Source:UniProtKB/TrEMBL;Acc:A0A178WFZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.