Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g020000.1.1 | Tomato | cytosol | 84.03 | 84.03 |
| PGSC0003DMT400090846 | Potato | cytosol | 82.35 | 80.99 |
| Solyc01g103810.1.1 | Tomato | cytosol | 75.63 | 77.59 |
| Solyc01g103820.1.1 | Tomato | cytosol | 57.98 | 73.4 |
| VIT_17s0000g06200.t01 | Wine grape | cytosol | 17.65 | 42.86 |
| KRH01145 | Soybean | cytosol | 24.37 | 38.67 |
| Solyc03g116070.1.1 | Tomato | mitochondrion | 25.21 | 36.14 |
| Zm00001d052395_P001 | Maize | plastid | 23.53 | 32.56 |
| Solyc03g061620.1.1 | Tomato | cytosol | 23.53 | 31.82 |
| EES16563 | Sorghum | cytosol | 24.37 | 31.52 |
| KRH40102 | Soybean | cytosol, mitochondrion | 19.33 | 31.51 |
| Zm00001d023289_P001 | Maize | cytosol | 24.37 | 29.59 |
| Zm00001d023286_P001 | Maize | cytosol | 24.37 | 29.59 |
| EES07913 | Sorghum | cytosol | 24.37 | 29.59 |
| Zm00001d044662_P001 | Maize | cytosol, plastid | 24.37 | 29.0 |
| KRH40101 | Soybean | mitochondrion | 23.53 | 28.87 |
| TraesCS5D01G149400.1 | Wheat | cytosol | 22.69 | 28.72 |
| TraesCS5B01G141400.1 | Wheat | cytosol | 22.69 | 28.72 |
| TraesCS5A01G142700.1 | Wheat | cytosol | 22.69 | 28.72 |
| HORVU5Hr1G045580.1 | Barley | cytosol | 22.69 | 28.72 |
| Solyc02g067330.1.1 | Tomato | cytosol, nucleus, plastid | 24.37 | 28.43 |
| KRH40100 | Soybean | mitochondrion | 22.69 | 28.12 |
| TraesCS3A01G448100.1 | Wheat | cytosol | 22.69 | 28.12 |
| TraesCS3A01G448000.1 | Wheat | cytosol | 22.69 | 28.12 |
| Os12t0124500-01 | Rice | cytosol, plastid | 24.37 | 27.62 |
| Os11t0128300-01 | Rice | cytosol, plastid | 24.37 | 27.62 |
| TraesCS3B01G484100.1 | Wheat | cytosol | 21.85 | 27.08 |
| Solyc02g087970.1.1 | Tomato | mitochondrion | 20.17 | 26.67 |
| KRH01146 | Soybean | cytosol | 21.85 | 26.53 |
| HORVU3Hr1G096990.1 | Barley | cytosol | 19.33 | 23.23 |
| Solyc04g074990.2.1 | Tomato | nucleus | 26.05 | 21.68 |
| Solyc05g051420.1.1 | Tomato | nucleus | 28.57 | 20.36 |
| Solyc04g014260.1.1 | Tomato | nucleus | 36.97 | 17.81 |
| Solyc03g098060.1.1 | Tomato | nucleus | 25.21 | 16.76 |
| Solyc04g080490.2.1 | Tomato | nucleus | 33.61 | 13.79 |
| Solyc02g067310.2.1 | Tomato | nucleus | 33.61 | 13.7 |
| Solyc01g102980.2.1 | Tomato | nucleus | 32.77 | 13.45 |
| Solyc02g067320.1.1 | Tomato | nucleus | 33.61 | 12.08 |
| Solyc05g007580.1.1 | Tomato | nucleus | 28.57 | 11.45 |
| Solyc02g085160.1.1 | Tomato | nucleus | 26.05 | 10.58 |
| Solyc09g089550.2.1 | Tomato | nucleus | 28.57 | 4.22 |
Protein Annotations
| EnsemblPlants:Solyc05g018740.1.1 | EnsemblPlantsGene:Solyc05g018740.1 | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF7 |
| PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | TIGRFAMs:TIGR01566 | UniParc:UPI0002767408 | UniProt:K4BZC8 |
| MapMan:15.5.3.13 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:23129391..23129750
Molecular Weight (calculated)
13675.3 Da
IEP (calculated)
9.277
GRAVY (calculated)
-0.555
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNNSSSNPS GDMTIKYGIC LKNHATNFGD YSVDGCREFV KRGDDGTKEA YICANCGCLR SFHRMNSHSL YHPPILRSRF LHPHIHPHGR ENAPIISHPF
101: MSRFVLVQYI RRPVFYNHP
101: MSRFVLVQYI RRPVFYNHP
1: MRKRQVVLRR ASPEEPSRSS STASSLTVRT VRYGECQKNH AAAVGGYAVD GCREFMASRG EEGTVAALTC AACGCHRSFH RREIETEVVC DCNSPPSTGN
Arabidopsis Description
MIF2Mini zinc finger protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJW5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.