Factsheet for GSMUA_Achr6P24230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P13300_001
GSMUA_Achr2P23010_001
GSMUA_Achr3P16680_001
GSMUA_Achr3P19060_001
GSMUA_Achr3P20390_001
GSMUA_Achr3P31090_001
GSMUA_Achr4P07850_001
GSMUA_Achr4P14910_001
GSMUA_Achr5P05500_001
GSMUA_Achr6P02170_001
GSMUA_Achr6P02700_001
GSMUA_Achr6P17420_001
GSMUA_Achr6P22120_001
GSMUA_Achr6P24230_001
GSMUA_Achr6P27240_001
GSMUA_Achr6P28870_001
GSMUA_Achr7P19060_001
GSMUA_Achr7P25600_001
GSMUA_Achr8P27010_001
GSMUA_Achr9P08090_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75240.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr2P23010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P19060_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr3P31090_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P07850_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr4P14910_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P22120_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P24230_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr6P27240_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr7P25600_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr8P27010_001	AT3G50890.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT1G75240.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT1G75240.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT2G18350.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT2G18350.1	GSMUA_AchrUn_...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr1P13300_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr3P16680_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P17420_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr6P28870_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr9P08090_001	AT1G14440.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr2P23010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P19060_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr3P31090_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P07850_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr4P14910_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P22120_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P24230_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr6P27240_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr7P25600_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr8P27010_001	AT1G75240.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr6P02700_001	AT5G15210.1	16428600
AT3G50890.1	GSMUA_Achr10P...	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr3P20390_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr5P05500_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr6P02170_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_Achr7P19060_001	AT5G65410.1	16428600
AT3G50890.1	GSMUA_AchrUn_...	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19060_001	Banana	nucleus	70.85	65.83
GSMUA_Achr6P30650_001	Banana	mitochondrion	15.25	35.79
GSMUA_AchrUn_...	Banana	cytosol	14.8	35.48
GSMUA_Achr6P17420_001	Banana	nucleus	24.66	26.57
GSMUA_Achr7P19060_001	Banana	nucleus	23.77	25.73
GSMUA_Achr3P20390_001	Banana	nucleus	22.87	24.64
GSMUA_Achr10P...	Banana	nucleus	25.11	24.45
GSMUA_Achr5P05500_001	Banana	nucleus	26.01	24.37
TraesCS1A01G418600.1	Wheat	nucleus	24.22	24.0
GSMUA_Achr6P28870_001	Banana	nucleus	24.22	23.89
GSMUA_Achr6P02170_001	Banana	nucleus	24.66	23.81
TraesCS1B01G448600.1	Wheat	nucleus	26.01	23.02
HORVU1Hr1G091470.1	Barley	nucleus	24.22	22.98
GSMUA_AchrUn_...	Banana	nucleus	25.11	22.4
GSMUA_Achr1P13300_001	Banana	nucleus	22.42	22.12
Os05t0579300-01	Rice	nucleus	25.11	21.96
TraesCS1D01G426300.1	Wheat	nucleus	24.22	21.6
GSMUA_Achr10P...	Banana	nucleus	23.32	21.49
GSMUA_Achr9P08090_001	Banana	nucleus	22.87	21.16
CDY37252	Canola	nucleus	24.22	20.69
CDY62531	Canola	nucleus	24.22	20.53
Os01t0635550-00	Rice	nucleus	21.08	20.26
GSMUA_Achr3P16680_001	Banana	nucleus	21.08	20.17
Zm00001d009674_P001	Maize	nucleus	21.52	20.08
GSMUA_Achr10P...	Banana	nucleus	23.77	20.0
TraesCS3B01G258400.1	Wheat	nucleus	20.63	19.83
GSMUA_Achr6P02700_001	Banana	nucleus	21.08	19.75
TraesCS3A01G226100.1	Wheat	nucleus	20.63	19.57
TraesCS3D01G224100.1	Wheat	nucleus	20.63	19.49
Bra036852.1-P	Field mustard	nucleus	18.83	19.18
CDX77960	Canola	nucleus	18.83	19.18
CDX73775	Canola	nucleus	18.39	19.07
AT3G50890.1	Thale cress	nucleus	21.08	18.88
CDX85886	Canola	nucleus	24.66	18.71
Bra008185.1-P	Field mustard	nucleus	24.66	18.71
GSMUA_Achr2P23010_001	Banana	nucleus	24.22	18.56
CDX68137	Canola	nucleus	24.66	18.52
CDY45419	Canola	nucleus	23.77	18.4
GSMUA_Achr3P31090_001	Banana	nucleus	23.32	18.37
CDY28987	Canola	nucleus	20.18	18.37
Bra003759.1-P	Field mustard	nucleus	24.22	18.37
CDX90679	Canola	nucleus	19.73	18.11
CDX73152	Canola	nucleus	24.22	18.06
PGSC0003DMT400009581	Potato	nucleus	22.87	17.96
Solyc04g080490.2.1	Tomato	nucleus	23.32	17.93
Bra015857.1-P	Field mustard	nucleus	24.22	17.88
GSMUA_Achr4P14910_001	Banana	nucleus	26.46	17.88
GSMUA_Achr10P...	Banana	nucleus	20.63	17.62
AT1G75240.1	Thale cress	nucleus	24.22	17.48
CDY70550	Canola	nucleus	19.73	17.12
VIT_18s0001g12580.t01	Wine grape	nucleus	24.22	17.09
GSMUA_Achr7P25600_001	Banana	nucleus	26.46	17.0
AT2G18350.1	Thale cress	nucleus	19.73	16.79
CDY70108	Canola	nucleus	19.73	16.6
GSMUA_Achr8P27010_001	Banana	nucleus	23.77	16.51
Bra037224.1-P	Field mustard	nucleus	19.28	16.23
KRH08258	Soybean	nucleus	23.77	16.11
KRH76785	Soybean	nucleus	22.87	16.09
GSMUA_Achr4P07850_001	Banana	nucleus	23.77	16.01
CDY71124	Canola	nucleus	18.39	15.95
KRH69909	Soybean	nucleus	23.77	15.87
Bra012882.1-P	Field mustard	nucleus	18.83	15.85
OQU78488	Sorghum	plastid	25.56	15.28
GSMUA_Achr6P27240_001	Banana	plastid	25.56	14.84
KRH28682	Soybean	nucleus	21.97	14.58
Solyc02g085160.1.1	Tomato	nucleus	18.39	13.99
PGSC0003DMT400009033	Potato	nucleus	18.83	13.91
GSMUA_Achr6P22120_001	Banana	nucleus	24.22	13.57
VIT_04s0023g01880.t01	Wine grape	nucleus	23.77	12.24

Protein Annotations

EnsemblPlants:GSMUA_Achr6P24230_001	EnsemblPlants:GSMUA_Achr6T24230_001	EnsemblPlantsGene:GSMUA_Achr6G24230_001	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer	PANTHER:PTHR31948
PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	SEG:seg	TIGRFAMs:TIGR01566	UniParc:UPI0002953D72
UniProt:M0T9R9	MapMan:15.5.3.13	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G24230_001]

Coordinates

chr6:-:24732143..24732986

Molecular Weight (calculated)

23720.1 Da

IEP (calculated)

12.337

GRAVY (calculated)

-0.939

Length

223 amino acids

Sequence
(BLAST)

001: MDLSVVPYKG GSEEAAEAAG GGGGGGRYRE CLRNHAAAMG GQSYDGCGEF MPGGEDGSLE ALKCAACGCH RNFHRREGIS LVQSPPPQPR RTVAAGWGRR
101: RRRGARRQRP RRRGRGSGSA PSSRRSRRRR CRPSRRSWGG ASRSRTTSRW TSSAFRSASS ATSSRSGCTT TRTTSPPPPP PLPPTPLPPP PPLPLPQSLP
201: PAMPPPPRPS GSSPTRMVHI VSA

Best Arabidopsis Sequence Match ( AT1G14440.1 )
(BLAST)

001: MEIASQEDHD MPIPLNTTFG GGGSHGHMIH HHDHHAANSA PPTHNNNNTT QPPPMPLHGN GHGNNYDHHH HQDPHHVGYN AIIKKPMIKY KECLKNHAAA
101: MGGNATDGCG EFMPSGEDGS IEALTCSACN CHRNFHRKEV EGELAATAMS PYHQHPPHRK LMLNHQKIRS AMPHQMIMPI GVSNYRYMHN NSESEDFMEE
201: DGVTTASRSL PNLPYNQKKR FRTKFTPEQK EKMLSFAEKV GWKIQRQEDC VVQRFCEEIG VKRRVLKVWM HNNKIHFSKK NNINLEDNDN EKINNLNNVD
301: LSGNNDMTKI VP

Arabidopsis Description

ZHD4Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.