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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra004399.1-P
Bra007869.1-P
Bra008185.1-P
Bra008712.1-P
Bra012882.1-P
Bra015857.1-P
Bra024382.1-P
Bra025363.1-P
Bra025644.1-P
Bra026219.1-P
Bra026830.1-P
Bra031859.1-P
Bra036852.1-P
Bra037816.1-P
Bra039038.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G75240.1 Bra026219.1-P AT1G14440.1 16428600
AT1G75240.1 Bra026830.1-P AT1G14440.1 16428600
AT1G75240.1 Bra004399.1-P AT1G69600.1 16428600
AT1G75240.1 Bra007869.1-P AT1G69600.1 16428600
AT1G75240.1 Bra008185.1-P AT1G75240.1 16428600
AT1G75240.1 Bra015857.1-P AT1G75240.1 16428600
AT1G75240.1 Bra025363.1-P AT3G28920.1 16428600
AT1G75240.1 Bra039038.1-P AT3G28920.1 16428600
AT1G75240.1 Bra012882.1-P AT3G50890.1 16428600
AT1G75240.1 Bra036852.1-P AT3G50890.1 16428600
AT1G75240.1 Bra008712.1-P AT5G15210.1 16428600
AT1G75240.1 Bra025644.1-P AT5G39760.1 16428600
AT1G75240.1 Bra024382.1-P AT5G65410.1 16428600
AT1G75240.1 Bra031859.1-P AT5G65410.1 16428600
AT1G75240.1 Bra037816.1-P AT5G65410.1 16428600
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY45419 Canola nucleus 94.7 99.31
CDX73152 Canola nucleus 97.02 97.99
Bra008185.1-P Field mustard nucleus 86.75 89.12
AT1G75240.1 Thale cress nucleus 87.09 85.11
Bra003759.1-P Field mustard nucleus 81.13 83.33
Bra031051.1-P Field mustard mitochondrion 14.24 48.86
Bra016538.1-P Field mustard mitochondrion 13.58 46.59
Bra025688.1-P Field mustard mitochondrion 13.24 45.45
Bra015898.1-P Field mustard mitochondrion 13.91 44.68
Bra010485.1-P Field mustard nucleus 30.79 44.29
Bra013822.1-P Field mustard nucleus 32.12 43.11
Bra039039.1-P Field mustard mitochondrion 13.58 41.84
Bra003791.1-P Field mustard mitochondrion 13.24 41.24
Bra025362.1-P Field mustard mitochondrion 13.58 41.0
PGSC0003DMT400009581 Potato nucleus 36.42 38.73
Solyc04g080490.2.1 Tomato nucleus 37.09 38.62
Bra037224.1-P Field mustard nucleus 33.44 38.11
Bra037816.1-P Field mustard nucleus 29.47 36.78
Bra036852.1-P Field mustard nucleus 26.49 36.53
TraesCS1A01G418600.1 Wheat nucleus 26.82 36.0
Bra006657.1-P Field mustard nucleus 21.19 35.16
VIT_18s0001g12580.t01 Wine grape nucleus 36.42 34.81
Bra031859.1-P Field mustard nucleus 31.13 34.56
TraesCS1B01G448600.1 Wheat nucleus 28.15 33.73
HORVU1Hr1G091470.1 Barley nucleus 26.16 33.62
Zm00001d009674_P001 Maize nucleus 26.49 33.47
Bra007869.1-P Field mustard nucleus 25.17 33.04
Os05t0579300-01 Rice nucleus 27.81 32.94
TraesCS1D01G426300.1 Wheat nucleus 27.15 32.8
Bra004399.1-P Field mustard nucleus 24.83 32.47
Bra024382.1-P Field mustard nucleus 31.46 32.42
TraesCS3B01G258400.1 Wheat nucleus 24.5 31.9
Os01t0635550-00 Rice nucleus 24.5 31.9
Bra026589.1-P Field mustard nucleus 31.46 31.67
GSMUA_Achr2P23010_001 Banana nucleus 30.13 31.27
TraesCS3A01G226100.1 Wheat nucleus 24.17 31.06
TraesCS3D01G224100.1 Wheat nucleus 24.17 30.93
Bra026219.1-P Field mustard nucleus 31.46 30.65
GSMUA_Achr10P... Banana nucleus 26.82 30.57
Bra026830.1-P Field mustard nucleus 31.46 30.25
Bra008712.1-P Field mustard cytosol 25.5 29.28
Bra039038.1-P Field mustard nucleus 28.81 28.16
GSMUA_Achr3P31090_001 Banana nucleus 26.16 27.92
Bra012882.1-P Field mustard nucleus 24.17 27.55
GSMUA_Achr8P27010_001 Banana nucleus 29.14 27.41
GSMUA_Achr4P14910_001 Banana nucleus 29.47 26.97
Bra039615.1-P Field mustard cytosol 15.89 26.52
Bra025644.1-P Field mustard nucleus 27.81 26.5
GSMUA_Achr4P07850_001 Banana nucleus 27.81 25.38
GSMUA_Achr7P25600_001 Banana nucleus 29.14 25.36
Bra025363.1-P Field mustard nucleus 28.15 24.71
GSMUA_Achr6P24230_001 Banana nucleus 17.88 24.22
Bra027455.1-P Field mustard nucleus 22.85 24.04
OQU78488 Sorghum plastid 28.48 23.06
GSMUA_Achr3P19060_001 Banana nucleus 17.55 22.08
GSMUA_Achr6P27240_001 Banana plastid 27.81 21.88
GSMUA_Achr6P22120_001 Banana nucleus 28.48 21.61
Os02t0706600-00 Rice nucleus 29.8 21.08
KXG30914 Sorghum nucleus 28.15 20.94
Zm00001d017784_P001 Maize nucleus 28.48 20.62
TraesCS6B01G301000.1 Wheat nucleus 29.47 19.31
TraesCS6A01G273700.1 Wheat nucleus 29.47 19.14
TraesCS6D01G253700.1 Wheat nucleus 29.47 19.14
Zm00001d051573_P001 Maize nucleus 28.15 19.06
HORVU6Hr1G069090.1 Barley nucleus 27.48 18.0
HORVU6Hr1G069070.1 Barley plastid 10.6 11.39
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.13EnsemblPlantsGene:Bra015857EnsemblPlants:Bra015857.1EnsemblPlants:Bra015857.1-PGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Homeobox-like_sfInterPro:Homeobox_domInterPro:Homeodomain_ZF_HDInterPro:IPR001356InterPro:IPR006456
UniProt:M4DH80PFAM:PD125774PFAM:PF04770PFscan:PS50071PFscan:PS51523PANTHER:PTHR31948
PANTHER:PTHR31948:SF43SUPFAM:SSF46689TIGRFAMs:TIGR01565TIGRFAMs:TIGR01566UniParc:UPI0002541F0CInterPro:ZF_HD_homeobox_Cys/His_dimer
SEG:seg:::::
Description
AT1G75240 (E=2e-093) AtHB33 | AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33); DNA binding / transcription factor
Coordinates
chrA07:+:20479719..20480627
Molecular Weight (calculated)
32935.6 Da
IEP (calculated)
8.604
GRAVY (calculated)
-0.915
Length
302 amino acids
Sequence
(BLAST)
001: MDMRSHEMVE RRRDDNGNNG VGSIANEDNV NGNNNNNTRV SSQTLDHHQS KSPSSFVISA AAKTAVRYRE CLKNHAANVG GSVHDGCGEF MPSGEEGTIE
101: ALRCAACDCH RNFHRKEVDG VGSSDVIAHH HRHHHHQYGG GGGGGRRPPP PNMMLNPLML PPPPNYTPMH HHKYGMSPPG GAGMVTPMSV AYGGSGGGGG
201: GAESSSEDLN MYGQSSGEHG GEAAAGQMAF SMSSKKRFRT KFTTEQKERM MEFAEKLGWR MNKQDEEELK RFCGEIGVKR QVFKVWMHNN KNNARKPPPS
301: TV
Best Arabidopsis Sequence Match ( AT1G75240.1 )
(BLAST)
001: MDMRSHEMIE RRREDNGNNN GGVVISNIIS TNIDDNCNGN NNNTRVSCNS QTLDHHQSKS PSSFSISAAA KPTVRYRECL KNHAASVGGS VHDGCGEFMP
101: SGEEGTIEAL RCAACDCHRN FHRKEMDGVG SSDLISHHRH HHYHHNQYGG GGGRRPPPPN MMLNPLMLPP PPNYQPIHHH KYGMSPPGGG GMVTPMSVAY
201: GGGGGGAESS SEDLNLYGQS SGEGAGAAAG QMAFSMSSSK KRFRTKFTTD QKERMMDFAE KLGWRMNKQD EEELKRFCGE IGVKRQVFKV WMHNNKNNAK
301: KPPTPTTTL
Arabidopsis Description
ZHD5ZHD5 [Source:UniProtKB/TrEMBL;Acc:A0A178WFZ4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.