Factsheet for Bra006657.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60480.1	Bra004399.1-P	AT1G69600.1	16428600
AT5G60480.1	Bra007869.1-P	AT1G69600.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88760	Canola	nucleus	97.25	97.79
AT5G60480.1	Thale cress	nucleus	68.13	55.61
Bra004399.1-P	Field mustard	nucleus	51.65	40.69
Bra007869.1-P	Field mustard	nucleus	49.45	39.13
Bra008712.1-P	Field mustard	cytosol	52.2	36.12
Bra031051.1-P	Field mustard	mitochondrion	15.93	32.95
Bra025688.1-P	Field mustard	mitochondrion	15.93	32.95
Bra016538.1-P	Field mustard	mitochondrion	14.84	30.68
Bra003791.1-P	Field mustard	mitochondrion	15.93	29.9
Bra015898.1-P	Field mustard	mitochondrion	15.38	29.79
Bra013822.1-P	Field mustard	nucleus	36.81	29.78
Bra037816.1-P	Field mustard	nucleus	39.56	29.75
Bra039038.1-P	Field mustard	nucleus	49.45	29.13
Bra010485.1-P	Field mustard	nucleus	33.52	29.05
Bra039039.1-P	Field mustard	mitochondrion	15.38	28.57
Bra025362.1-P	Field mustard	mitochondrion	15.38	28.0
Bra036852.1-P	Field mustard	nucleus	33.52	27.85
Bra031859.1-P	Field mustard	nucleus	41.21	27.57
Bra025644.1-P	Field mustard	nucleus	47.25	27.13
Bra025363.1-P	Field mustard	nucleus	48.9	25.87
Bra024382.1-P	Field mustard	nucleus	41.21	25.6
Bra037224.1-P	Field mustard	nucleus	32.42	22.26
Bra026589.1-P	Field mustard	nucleus	36.26	22.0
Bra003759.1-P	Field mustard	nucleus	35.16	21.77
Bra015857.1-P	Field mustard	nucleus	35.16	21.19
Bra008185.1-P	Field mustard	nucleus	34.07	21.09
Bra026830.1-P	Field mustard	nucleus	36.26	21.02
Bra026219.1-P	Field mustard	nucleus	35.71	20.97
Bra012882.1-P	Field mustard	nucleus	29.67	20.38
Bra027455.1-P	Field mustard	nucleus	30.22	19.16
Bra039615.1-P	Field mustard	cytosol	14.29	14.36

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.13	EnsemblPlantsGene:Bra006657	EnsemblPlants:Bra006657.1	EnsemblPlants:Bra006657.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456
UniProt:M4CR16	PFAM:PD125774	PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF29
SUPFAM:SSF46689	TIGRFAMs:TIGR01565	TIGRFAMs:TIGR01566	UniParc:UPI00025401AB	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg

Description

AT5G60480 (E=2e-059) AtHB26 | AtHB26 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26); DNA binding / transcription factor

Coordinates

chrA03:-:4500801..4501349

Molecular Weight (calculated)

20543.5 Da

IEP (calculated)

9.582

GRAVY (calculated)

-0.584

Length

182 amino acids

Sequence
(BLAST)

001: MGFLYNECLK NQAVSFGGYA LDGCGEFMPK STTILTDPPS LSCDACGCHR NFHRRDPSNV FIHRTNSTPP PPPLQPVAST QHLLLSLSGS GFSGPSDQDM
101: GKISTVDRKR KRTKFTVKQK VMMRAFAERA GWKINGCDDE YVREFCREVG VEREVLKVWI HNNKYFANGR NRNTTSSMFQ KL

Best Arabidopsis Sequence Match ( AT5G60480.1 )
(BLAST)

001: MSSLSKPNRQ FLSPTTNNQD TGREQTIACA RDMVVLYNEC LKNHAVSLGG HALDGCGEFT PKSTTILTDP PSLRCDACGC HRNFHRRSPS DGFSQHRSPP
101: SPLQLQPLAP VPNLLLSLSS GFFGPSDQEV KNKFTVERDV RKTAMIKKHK RTKFTAEQKV KMRGFAERAG WKINGWDEKW VREFCSEVGI ERKVLKVWIH
201: NNKYFNNGRS RDTTSSMSLN LKL

Arabidopsis Description

ZHD12Zinc-finger homeodomain protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.