Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60480.1 | CDX95914 | AT1G69600.1 | 16428600 |
| AT5G60480.1 | CDY01760 | AT1G69600.1 | 16428600 |
| AT5G60480.1 | CDY28566 | AT1G69600.1 | 16428600 |
| AT5G60480.1 | CDY44079 | AT1G69600.1 | 16428600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006657.1-P | Field mustard | nucleus | 97.79 | 97.25 |
| CDY69628 | Canola | nucleus | 93.92 | 94.97 |
| AT5G60480.1 | Thale cress | nucleus | 69.06 | 56.05 |
| CDX95914 | Canola | nucleus | 52.49 | 41.13 |
| CDY01760 | Canola | nucleus | 52.49 | 37.11 |
| CDX69541 | Canola | nucleus | 52.49 | 36.12 |
| CDY44079 | Canola | nucleus | 49.72 | 35.29 |
| CDY28566 | Canola | nucleus | 49.72 | 35.29 |
| CDX81897 | Canola | mitochondrion | 16.57 | 34.09 |
| CDX85059 | Canola | nucleus | 44.2 | 33.61 |
| CDY26722 | Canola | mitochondrion | 16.02 | 32.95 |
| CDY21695 | Canola | mitochondrion | 16.02 | 32.95 |
| CDY19248 | Canola | mitochondrion | 16.02 | 32.95 |
| CDX83807 | Canola | mitochondrion | 16.02 | 32.95 |
| CDY08945 | Canola | nucleus | 35.91 | 30.95 |
| CDX85228 | Canola | mitochondrion, nucleus | 15.47 | 30.77 |
| CDX86404 | Canola | mitochondrion | 15.47 | 30.77 |
| CDX96695 | Canola | mitochondrion | 14.92 | 30.68 |
| CDY20008 | Canola | nucleus | 47.51 | 30.61 |
| CDX88950 | Canola | nucleus | 35.36 | 30.48 |
| CDY54719 | Canola | nucleus | 40.33 | 30.29 |
| CDY03431 | Canola | nucleus | 37.02 | 30.04 |
| CDX68172 | Canola | mitochondrion | 16.02 | 29.9 |
| CDX85849 | Canola | mitochondrion | 16.02 | 29.9 |
| CDX73105 | Canola | mitochondrion | 15.47 | 29.79 |
| CDX96558 | Canola | mitochondrion | 15.47 | 29.79 |
| CDY34299 | Canola | nucleus | 37.02 | 29.78 |
| CDY24844 | Canola | nucleus | 34.25 | 29.52 |
| CDY00104 | Canola | nucleus | 50.28 | 29.17 |
| CDX81284 | Canola | nucleus | 40.33 | 28.63 |
| CDY00105 | Canola | mitochondrion | 15.47 | 28.57 |
| CDY20009 | Canola | mitochondrion | 15.47 | 28.57 |
| CDY37827 | Canola | nucleus | 41.99 | 27.94 |
| CDX77960 | Canola | nucleus | 33.7 | 27.85 |
| CDY33960 | Canola | nucleus | 40.88 | 27.51 |
| CDX74428 | Canola | nucleus | 48.07 | 27.44 |
| CDX73775 | Canola | nucleus | 32.04 | 26.98 |
| CDX85230 | Canola | nucleus | 50.28 | 26.84 |
| CDY56033 | Canola | nucleus | 40.33 | 26.35 |
| CDX86403 | Canola | nucleus | 49.72 | 26.16 |
| CDY14559 | Canola | nucleus | 41.99 | 25.94 |
| CDX90679 | Canola | nucleus | 33.15 | 24.69 |
| CDY37252 | Canola | nucleus | 34.81 | 24.14 |
| CDY28987 | Canola | nucleus | 32.04 | 23.67 |
| CDY62531 | Canola | nucleus | 34.25 | 23.57 |
| CDY70550 | Canola | nucleus | 33.15 | 23.35 |
| CDY70108 | Canola | nucleus | 33.15 | 22.64 |
| CDY45419 | Canola | nucleus | 35.36 | 22.22 |
| CDX85886 | Canola | nucleus | 35.91 | 22.11 |
| CDY09363 | Canola | nucleus | 35.91 | 21.81 |
| CDY41692 | Canola | nucleus | 35.91 | 21.67 |
| CDX68137 | Canola | nucleus | 35.36 | 21.55 |
| CDY53549 | Canola | nucleus | 36.46 | 21.02 |
| CDY71124 | Canola | nucleus | 29.83 | 21.01 |
| CDX81638 | Canola | nucleus | 36.46 | 20.95 |
| CDY45257 | Canola | nucleus | 35.91 | 20.9 |
| CDX73152 | Canola | nucleus | 34.25 | 20.74 |
| CDY39311 | Canola | nucleus | 34.81 | 20.59 |
| CDY46298 | Canola | cytosol | 7.18 | 15.48 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.13 | GO:A0A078DHT1 | EnsemblPlants:CDX88760 | ProteinID:CDX88760 | ProteinID:CDX88760.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00148816001 | InterPro:Homeobox-like_sf |
| InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF29 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | UniParc:UPI0004EF4B02 | InterPro:ZF_HD_homeobox_Cys/His_dimer |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g08890D
Coordinates
chrLK031856:+:813913..814458
Molecular Weight (calculated)
20386.4 Da
IEP (calculated)
9.582
GRAVY (calculated)
-0.585
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFLYNECLK NQAVSFGGYA LDGCGEFMPK STTILTDPPS LSCDACGCHR NFHRRDPSSV FIHRTNSPPP PPPLQPATST HLLLSLSGSG FSGPSDQDMG
101: KISTVDRKRK RTKFTVKQKV MMRAFAERAG WKINGCDDEY VREFCREVGV EREVLKVWIH NNKYFANGRN RNTTSSMFQK L
101: KISTVDRKRK RTKFTVKQKV MMRAFAERAG WKINGCDDEY VREFCREVGV EREVLKVWIH NNKYFANGRN RNTTSSMFQK L
001: MSSLSKPNRQ FLSPTTNNQD TGREQTIACA RDMVVLYNEC LKNHAVSLGG HALDGCGEFT PKSTTILTDP PSLRCDACGC HRNFHRRSPS DGFSQHRSPP
101: SPLQLQPLAP VPNLLLSLSS GFFGPSDQEV KNKFTVERDV RKTAMIKKHK RTKFTAEQKV KMRGFAERAG WKINGWDEKW VREFCSEVGI ERKVLKVWIH
201: NNKYFNNGRS RDTTSSMSLN LKL
101: SPLQLQPLAP VPNLLLSLSS GFFGPSDQEV KNKFTVERDV RKTAMIKKHK RTKFTAEQKV KMRGFAERAG WKINGWDEKW VREFCSEVGI ERKVLKVWIH
201: NNKYFNNGRS RDTTSSMSLN LKL
Arabidopsis Description
ZHD12Zinc-finger homeodomain protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKJ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.