CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67533
CDX67739
CDX69541
CDX73152
CDX73775
CDX74428
CDX77960
CDX81284
CDX81638
CDX85059
CDX85230
CDX86403
CDX90679
CDX95914
CDY00104
CDY01760
CDY10502
CDY13354
CDY14559
CDY20008
CDY28566
CDY28987
CDY33960
CDY37252
CDY37827
CDY39311
CDY42413
CDY44079
CDY45257
CDY45419
CDY53549
CDY54719
CDY56033
CDY62531
CDY71253

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15210.1	CDX81638	AT1G14440.1	16428600
AT5G15210.1	CDY39311	AT1G14440.1	16428600
AT5G15210.1	CDY45257	AT1G14440.1	16428600
AT5G15210.1	CDY53549	AT1G14440.1	16428600
AT5G15210.1	CDX67739	AT1G54330.1	21245844
AT5G15210.1	CDY10502	AT1G54330.1	21245844
AT5G15210.1	CDY42413	AT1G54330.1	21245844
AT5G15210.1	CDY71253	AT1G54330.1	21245844
AT5G15210.1	CDX95914	AT1G69600.1	16428600
AT5G15210.1	CDY01760	AT1G69600.1	16428600
AT5G15210.1	CDY28566	AT1G69600.1	16428600
AT5G15210.1	CDY44079	AT1G69600.1	16428600
AT5G15210.1	CDX73152	AT1G75240.1	16428600
AT5G15210.1	CDY37252	AT1G75240.1	16428600
AT5G15210.1	CDY45419	AT1G75240.1	16428600
AT5G15210.1	CDY62531	AT1G75240.1	16428600
AT5G15210.1	CDX67533	AT2G18196.1	18974936
AT5G15210.1	CDY13354	AT2G18196.1	18974936
AT5G15210.1	CDX85230	AT3G28920.1	16428600
AT5G15210.1	CDX86403	AT3G28920.1	16428600
AT5G15210.1	CDY00104	AT3G28920.1	16428600
AT5G15210.1	CDY20008	AT3G28920.1	16428600
AT5G15210.1	CDX73775	AT3G50890.1	16428600
AT5G15210.1	CDX77960	AT3G50890.1	16428600
AT5G15210.1	CDX90679	AT3G50890.1	16428600
AT5G15210.1	CDY28987	AT3G50890.1	16428600
AT5G15210.1	CDX69541	AT5G15210.1	16428600
AT5G15210.1	CDX85059	AT5G15210.1	16428600
AT5G15210.1	CDX69541	AT5G15210.1	21245844
AT5G15210.1	CDX85059	AT5G15210.1	21245844
AT5G15210.1	CDX74428	AT5G39760.1	16428600
AT5G15210.1	CDY56033	AT5G39760.1	16428600
AT5G15210.1	CDX74428	AT5G39760.1	21245844
AT5G15210.1	CDY56033	AT5G39760.1	21245844
AT5G15210.1	CDX81284	AT5G65410.1	16428600
AT5G15210.1	CDY14559	AT5G65410.1	16428600
AT5G15210.1	CDY33960	AT5G65410.1	16428600
AT5G15210.1	CDY37827	AT5G65410.1	16428600
AT5G15210.1	CDY54719	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008712.1-P	Field mustard	cytosol	97.06	87.83
CDX69541	Canola	nucleus	97.06	87.83
AT5G15210.1	Thale cress	nucleus	78.15	68.63
CDX88760	Canola	nucleus	33.61	44.2
CDY69628	Canola	nucleus	32.35	43.02
CDY56033	Canola	nucleus	45.8	39.35
CDX74428	Canola	nucleus	52.1	39.12
VIT_01s0026g02460.t01	Wine grape	nucleus	37.4	38.7
CDY00104	Canola	nucleus	49.58	37.82
CDY20008	Canola	nucleus	44.54	37.72
CDX85230	Canola	nucleus	50.42	35.4
GSMUA_Achr6P02700_001	Banana	nucleus	34.87	34.87
CDX86403	Canola	nucleus	49.58	34.3
PGSC0003DMT400080288	Potato	nucleus	39.92	33.1
CDX95914	Canola	nucleus	31.93	32.9
KRH74865	Soybean	nucleus	39.92	32.09
KRH70724	Soybean	nucleus	39.08	31.96
CDY01760	Canola	nucleus	33.61	31.25
Solyc05g007580.1.1	Tomato	nucleus	38.66	30.98
Os09t0414600-02	Rice	nucleus	13.87	30.28
GSMUA_Achr10P...	Banana	nucleus	33.19	30.27
CDY28566	Canola	nucleus	31.93	29.8
CDY44079	Canola	nucleus	31.93	29.8
CDX77960	Canola	nucleus	27.31	29.68
CDY08945	Canola	nucleus	26.05	29.52
CDX88950	Canola	nucleus	25.63	29.05
CDY24844	Canola	nucleus	25.21	28.57
CDX73775	Canola	nucleus	25.63	28.37
CDY34299	Canola	nucleus	25.63	27.11
CDY03431	Canola	nucleus	25.21	26.91
CDX90679	Canola	nucleus	27.31	26.75
CDY54719	Canola	nucleus	26.89	26.56
Os08t0438400-01	Rice	plastid	36.97	26.04
CDX81284	Canola	nucleus	27.73	25.88
CDY28987	Canola	nucleus	26.47	25.71
CDY33960	Canola	nucleus	28.99	25.65
CDY37827	Canola	nucleus	28.99	25.37
KRH50585	Soybean	nucleus	37.82	25.14
CDX81897	Canola	mitochondrion	9.24	25.0
TraesCS3A01G308700.1	Wheat	nucleus	18.91	24.32
CDY62531	Canola	nucleus	26.47	23.95
CDY26722	Canola	mitochondrion	8.82	23.86
CDY21695	Canola	mitochondrion	8.82	23.86
CDY19248	Canola	mitochondrion	8.82	23.86
CDX83807	Canola	mitochondrion	8.82	23.86
CDX96695	Canola	mitochondrion	8.82	23.86
OQU86730	Sorghum	nucleus	26.47	23.77
CDY37252	Canola	nucleus	26.05	23.75
Zm00001d005757_P001	Maize	nucleus	34.87	22.99
Zm00001d020460_P001	Maize	nucleus	35.71	22.97
CDY14559	Canola	nucleus	28.15	22.87
TraesCS1D01G064300.1	Wheat	mitochondrion	16.39	22.54
Zm00001d032175_P001	Maize	cytosol	35.29	22.52
Zm00001d050443_P001	Maize	nucleus	34.45	22.4
KXG35632	Sorghum	nucleus	35.71	22.31
CDY70550	Canola	nucleus	23.95	22.18
KRG89637	Soybean	nucleus	16.81	21.98
EES15050	Sorghum	cytosol	35.29	21.54
CDY20009	Canola	mitochondrion	8.82	21.43
CDY00105	Canola	mitochondrion	8.82	21.43
CDY70108	Canola	nucleus	23.53	21.13
CDX85228	Canola	mitochondrion, nucleus	7.98	20.88
CDX86404	Canola	mitochondrion	7.98	20.88
CDY45419	Canola	nucleus	25.21	20.83
CDX85886	Canola	nucleus	25.63	20.75
CDY53549	Canola	nucleus	27.31	20.7
CDX81638	Canola	nucleus	27.31	20.63
CDY71124	Canola	nucleus	22.27	20.62
CDX68137	Canola	nucleus	25.63	20.54
CDX73152	Canola	nucleus	25.63	20.4
HORVU5Hr1G065740.1	Barley	nucleus	32.77	20.21
CDY09363	Canola	nucleus	25.21	20.13
TraesCS5A01G227100.1	Wheat	nucleus	32.35	20.1
CDY41692	Canola	nucleus	25.21	20.0
CDY45257	Canola	nucleus	26.05	19.94
TraesCS5D01G234600.1	Wheat	nucleus	32.35	19.9
TraesCS5B01G225700.1	Wheat	nucleus	32.35	19.74
CDX85849	Canola	mitochondrion	7.98	19.59
CDX68172	Canola	mitochondrion	7.98	19.59
TraesCS1B01G106800.1	Wheat	nucleus	23.53	19.31
CDY39311	Canola	nucleus	24.79	19.28
CDX73105	Canola	mitochondrion	7.56	19.15
CDX96558	Canola	mitochondrion	7.56	19.15
CDY46298	Canola	cytosol	6.72	19.05
TraesCS1A01G087700.1	Wheat	nucleus	22.69	18.88
HORVU1Hr1G013140.1	Barley	cytosol	4.62	14.67

Protein Annotations

EnsemblPlants:CDX85059	EnsemblPlantsGene:GSBRNA2T00142504001	Gene3D:1.10.10.60	GO:A0A078D9X3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	InterPro:ZF_HD_homeobox_Cys/His_dimer
PANTHER:PTHR31948	PANTHER:PTHR31948:SF29	PFAM:PD125774	PFAM:PF04770	ProteinID:CDX85059	ProteinID:CDX85059.1
SEG:seg	SUPFAM:SSF46689	TIGRFAMs:TIGR01565	UniParc:UPI0004EE1307	MapMan:15.5.3.13	:

Description

BnaC05g19960D

Coordinates

chrLK031839:-:1797566..1798868

Molecular Weight (calculated)

25896.3 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.597

Length

238 amino acids

Sequence
(BLAST)

001: MDVIATSATI VSHLDSQQPV TQAPTRIQPA KPISFSNGKH HHDHQHHASQ VVFIPSPTFN TSDPTSLTCD ACGCHRNFHR REDDLSAVSA AVPRIEFRPH
101: NRHQLPPPPL PPVGVGSQDD DDPASPPPIS SSYMLLALSG GATAAPVSRK RFRTKFSEFQ KGKMFEFAER VGWRMPKADD VDVVEFCREI GVERSVFKVW
201: MHNNKIPGRG GGARRANGDG GGGDGRESVP TNGSFTST

Best Arabidopsis Sequence Match ( AT5G15210.1 )
(BLAST)

001: MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHHHLASEA VAVATYKECL KNHAAGIGGH ALDGCGEFMP SPSFNSNDPA SLTCAACGCH
101: RNFHRREEDP SSLSAIVPAI EFRPHNRHQL PPPPPPHLAG IRSPDDDDSA SPPPISSSYM LLALSGGRGG ANTAVPMSRK RFRTKFSQYQ KEKMFEFSER
201: VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRS GARRANGGVV VGGVGDSRQS VVPTNGSFSS T

Arabidopsis Description

ZHD8Zinc-finger homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.