Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G013140.1 | Barley | cytosol | 27.17 | 62.67 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 35.26 | 25.63 |
| TraesCS5D01G149400.1 | Wheat | cytosol | 13.87 | 25.53 |
| TraesCS5D01G234700.1 | Wheat | mitochondrion | 13.29 | 24.73 |
| GSMUA_Achr10P... | Banana | nucleus | 35.84 | 23.75 |
| TraesCS3D01G224100.1 | Wheat | nucleus | 31.21 | 22.88 |
| PGSC0003DMT400080288 | Potato | nucleus | 36.99 | 22.3 |
| Solyc05g007580.1.1 | Tomato | nucleus | 36.99 | 21.55 |
| AT5G15210.1 | Thale cress | nucleus | 33.53 | 21.4 |
| TraesCS5D01G234600.1 | Wheat | nucleus | 44.51 | 19.9 |
| Bra008712.1-P | Field mustard | cytosol | 30.06 | 19.77 |
| CDX69541 | Canola | nucleus | 30.06 | 19.77 |
| TraesCS1D01G426300.1 | Wheat | nucleus | 28.32 | 19.6 |
| Zm00001d020460_P001 | Maize | nucleus | 41.62 | 19.46 |
| TraesCS2D01G303900.1 | Wheat | nucleus | 32.95 | 19.45 |
| KRH74865 | Soybean | nucleus | 32.95 | 19.26 |
| KRH70724 | Soybean | nucleus | 32.37 | 19.24 |
| KXG35632 | Sorghum | nucleus | 41.62 | 18.9 |
| TraesCS5D01G253100.1 | Wheat | nucleus | 31.79 | 18.58 |
| KRG89637 | Soybean | nucleus | 19.08 | 18.13 |
| VIT_01s0026g02460.t01 | Wine grape | nucleus | 23.7 | 17.83 |
| KRH50585 | Soybean | nucleus | 36.42 | 17.6 |
| CDX85059 | Canola | nucleus | 22.54 | 16.39 |
| TraesCS4D01G086300.1 | Wheat | nucleus | 32.95 | 14.65 |
| TraesCS6D01G253700.1 | Wheat | nucleus | 31.21 | 11.61 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G064300.1 | EnsemblPlantsGene:TraesCS1D01G064300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 | PANTHER:PTHR31948:SF29 |
| PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 | TIGRFAMs:TIGR01566 |
| MapMan:15.5.3.13 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:45078627..45080090
Molecular Weight (calculated)
19859.4 Da
IEP (calculated)
10.371
GRAVY (calculated)
-0.487
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIKYPKGFV KKVRQAIVAL AVEGVKYKEC SRNHALATSG QVVDGCGEWM PLGDLNPTDA SSYKWAACGG HYNLHHEMMM ERSLLLPPMA AIIQRLPAQL
101: LPATAPPPHV VMSARKWSYT MFTTYQKMRM QELSKHLGWR LQKRDKDIIK ARCHDIGISK DVFRNWRHNN KRN
101: LPATAPPPHV VMSARKWSYT MFTTYQKMRM QELSKHLGWR LQKRDKDIIK ARCHDIGISK DVFRNWRHNN KRN
001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
Arabidopsis Description
ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.