Factsheet for VIT_01s0026g02460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0199g00250.t01
VIT_01s0026g02460.t01
VIT_02s0025g03010.t01
VIT_12s0035g01880.t01
VIT_14s0108g00750.t01
VIT_18s0001g12580.t01
VIT_19s0085g00950.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15210.1	VIT_12s0035g01880.t01	AT1G14440.1	16428600
AT5G15210.1	VIT_19s0085g00950.t01	AT1G54330.1	21245844
AT5G15210.1	VIT_18s0001g12580.t01	AT1G75240.1	16428600
AT5G15210.1	VIT_02s0025g03010.t01	AT2G18196.1	18974936
AT5G15210.1	VIT_14s0108g00750.t01	AT3G28920.1	16428600
AT5G15210.1	VIT_18s0001g12580.t01	AT3G50890.1	16428600
AT5G15210.1	VIT_01s0026g02460.t01	AT5G15210.1	16428600
AT5G15210.1	VIT_01s0026g02460.t01	AT5G15210.1	21245844
AT5G15210.1	VIT_14s0108g00750.t01	AT5G39760.1	16428600
AT5G15210.1	VIT_14s0108g00750.t01	AT5G39760.1	21245844
AT5G15210.1	VIT_00s0199g00250.t01	AT5G65410.1	16428600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0042g00210.t01	Wine grape	nucleus	38.7	44.28
PGSC0003DMT400080288	Potato	nucleus	47.39	37.98
CDX85059	Canola	nucleus	38.7	37.4
Solyc05g007580.1.1	Tomato	nucleus	47.83	37.04
VIT_17s0000g06200.t01	Wine grape	cytosol	7.83	36.73
AT5G15210.1	Thale cress	nucleus	42.61	36.16
GSMUA_Achr6P02700_001	Banana	nucleus	36.96	35.71
VIT_14s0108g00750.t01	Wine grape	nucleus	54.35	35.21
CDX69541	Canola	nucleus	38.26	33.46
Bra008712.1-P	Field mustard	cytosol	38.26	33.46
VIT_17s0000g00810.t01	Wine grape	nucleus	21.74	32.26
GSMUA_Achr10P...	Banana	nucleus	35.65	31.42
KRH74865	Soybean	nucleus	40.0	31.08
KRH70724	Soybean	nucleus	39.13	30.93
VIT_00s0199g00250.t01	Wine grape	nucleus	32.17	30.33
VIT_18s0001g07140.t01	Wine grape	nucleus	29.57	29.57
KRH50585	Soybean	nucleus	43.48	27.93
Os08t0438400-01	Rice	plastid	40.43	27.51
OQU86730	Sorghum	nucleus	30.87	26.79
VIT_07s0130g00240.t01	Wine grape	nucleus	22.61	26.26
Zm00001d005757_P001	Maize	nucleus	40.87	26.04
KXG35632	Sorghum	nucleus	42.61	25.72
Zm00001d032175_P001	Maize	cytosol	41.3	25.47
Zm00001d020460_P001	Maize	nucleus	40.87	25.41
VIT_12s0035g01880.t01	Wine grape	nucleus	30.43	24.91
Os09t0414600-02	Rice	nucleus	11.74	24.77
EES15050	Sorghum	cytosol	41.74	24.62
TraesCS3A01G308700.1	Wheat	nucleus	19.13	23.78
TraesCS1D01G064300.1	Wheat	mitochondrion	17.83	23.7
TraesCS5A01G227100.1	Wheat	nucleus	38.26	22.98
Zm00001d050443_P001	Maize	nucleus	36.52	22.95
TraesCS5B01G225700.1	Wheat	nucleus	38.26	22.56
HORVU5Hr1G065740.1	Barley	nucleus	37.83	22.54
TraesCS5D01G234600.1	Wheat	nucleus	37.83	22.48
VIT_01s0026g02450.t01	Wine grape	cytosol	8.26	22.35
VIT_18s0117g00270.t01	Wine grape	nucleus	26.09	22.06
VIT_14s0108g00760.t01	Wine grape	mitochondrion	8.7	21.05
TraesCS1B01G106800.1	Wheat	nucleus	24.78	19.66
VIT_18s0001g12580.t01	Wine grape	nucleus	26.52	19.3
TraesCS1A01G087700.1	Wheat	nucleus	23.48	18.88
KRG89637	Soybean	nucleus	14.78	18.68
HORVU1Hr1G013140.1	Barley	cytosol	4.78	14.67
VIT_04s0023g01880.t01	Wine grape	nucleus	27.39	14.55
VIT_14s0108g00810.t01	Wine grape	cytosol	7.83	13.95
VIT_08s0056g01130.t01	Wine grape	nucleus	6.96	11.85

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100251688	wikigene:100251688	MapMan:15.5.3.13	ProteinID:CCB56544	ProteinID:CCB56544.1
UniProt:F6HPR3	EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:Homeodomain_ZF_HD	InterPro:IPR006456	EntrezGene:LOC100251688	wikigene:LOC100251688	PFAM:PD125774
PFAM:PF04770	PFscan:PS51523	PANTHER:PTHR31948	PANTHER:PTHR31948:SF28	SUPFAM:SSF46689	TIGR:TC57035
TIGRFAMs:TIGR01565	UniParc:UPI0002108837	ArrayExpress:VIT_01s0026g02460	EnsemblPlantsGene:VIT_01s0026g02460	EnsemblPlants:VIT_01s0026g02460.t01	unigene:Vvi.6894
RefSeq:XP_002273802	RefSeq:XP_002273802.1	InterPro:ZF_HD_homeobox_Cys/His_dimer	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:12042184..12043439

Molecular Weight (calculated)

25515.4 Da

IEP (calculated)

8.281

GRAVY (calculated)

-1.047

Length

230 amino acids

Sequence
(BLAST)

001: MPSPTSTPAD PTSLKCAACG CHRNFHRRDP DEPTTHVIEI HRHPLGPPRR SSPSPSPSPP PPPHPSSYYS SAPQMLLALS SGGAGRSDEH QIHPITVTRQ
101: DIPNGRKRFR TKFSQEQKEK MFSFSEKLGW KMQKSDEGLV EEFCNEVGVG KGVLKVWMHN NKHTFGKRDI SSNNNNNNDG HDTIISFATT NGLNNINGDS
201: NHNEKTCSFD DHHQQNHLHH LSTNGSSSSS

Best Arabidopsis Sequence Match ( AT1G69600.1 )
(BLAST)

001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS

Arabidopsis Description

ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.