Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G234600.1 | Wheat | nucleus | 95.9 | 96.64 |
| TraesCS5A01G227100.1 | Wheat | nucleus | 94.62 | 96.34 |
| HORVU5Hr1G065740.1 | Barley | nucleus | 92.31 | 93.26 |
| KXG35632 | Sorghum | nucleus | 62.82 | 64.3 |
| Zm00001d020460_P001 | Maize | nucleus | 60.51 | 63.78 |
| GSMUA_Achr6P02700_001 | Banana | nucleus | 25.38 | 41.6 |
| AT5G15210.1 | Thale cress | nucleus | 26.92 | 38.75 |
| VIT_01s0026g02460.t01 | Wine grape | nucleus | 22.56 | 38.26 |
| GSMUA_Achr10P... | Banana | nucleus | 25.13 | 37.55 |
| PGSC0003DMT400080288 | Potato | nucleus | 26.92 | 36.59 |
| Bra008712.1-P | Field mustard | cytosol | 24.62 | 36.5 |
| Solyc05g007580.1.1 | Tomato | nucleus | 27.69 | 36.36 |
| CDX69541 | Canola | nucleus | 24.36 | 36.12 |
| KRH70724 | Soybean | nucleus | 26.67 | 35.74 |
| TraesCS1B01G106800.1 | Wheat | nucleus | 26.41 | 35.52 |
| KRH74865 | Soybean | nucleus | 26.92 | 35.47 |
| TraesCS3B01G484100.1 | Wheat | cytosol | 8.72 | 35.42 |
| TraesCS1B01G448600.1 | Wheat | nucleus | 22.82 | 35.32 |
| CDX85059 | Canola | nucleus | 19.74 | 32.35 |
| TraesCS3B01G258400.1 | Wheat | nucleus | 19.23 | 32.33 |
| TraesCS5B01G141400.1 | Wheat | cytosol | 7.69 | 31.91 |
| TraesCS4B01G050800.1 | Wheat | cytosol, mitochondrion, nucleus | 19.23 | 31.78 |
| KRH50585 | Soybean | nucleus | 26.92 | 29.33 |
| KRG89637 | Soybean | nucleus | 13.59 | 29.12 |
| TraesCS2B01G322200.1 | Wheat | nucleus | 21.79 | 29.01 |
| TraesCS5B01G226000.1 | Wheat | mitochondrion | 6.67 | 27.96 |
| TraesCS5B01G243800.1 | Wheat | nucleus | 21.28 | 27.95 |
| TraesCS4B01G089700.1 | Wheat | nucleus | 23.59 | 23.17 |
| TraesCS6B01G301000.1 | Wheat | nucleus | 22.31 | 18.87 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G225700.1 | EnsemblPlantsGene:TraesCS5B01G225700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeodomain_ZF_HD | InterPro:IPR006456 | InterPro:ZF_HD_homeobox_Cys/His_dimer | PANTHER:PTHR31948 |
| PANTHER:PTHR31948:SF48 | PFAM:PD125774 | PFAM:PF04770 | PFscan:PS51523 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01565 | TIGRFAMs:TIGR01566 | MapMan:15.5.3.13 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:401667135..401668307
Molecular Weight (calculated)
40883.3 Da
IEP (calculated)
8.392
GRAVY (calculated)
-0.540
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMDVKYRP ALYPNGSVKK LRQAAPVPPP PPAAVEAVPT YKECLKNHAA AIGAHAVDGC GEWMPVVELN TADPASYKCA ACGCHRNFHR LVMVEGSPPP
101: PPPPPPALLP APPMPMPMPM PATVLHGLPQ RGHGQETPDD RLPGVDGDDS DSDSDGSEYD DERSVSPPQH PPPAHLPAPV AQQPPPPYIS SAPHPHMLLS
201: LNSSAPGAPQ GQSRLPAQLS PATAPPPHGM MPARKRFRTK FTAEQKQRMQ ELSERLGWRL QKRDEGVVDE WCRDIGVSKG VFKVWMHNNK HNYLGGHSAR
301: RSASAAASSA ATTPTAPAAG GPFRLSPATG APAPAPFNPS VSHSSPAPTT TGFNMNGTAS SASTATTTAT PSPIFAAGHK LNGASSPQSA
101: PPPPPPALLP APPMPMPMPM PATVLHGLPQ RGHGQETPDD RLPGVDGDDS DSDSDGSEYD DERSVSPPQH PPPAHLPAPV AQQPPPPYIS SAPHPHMLLS
201: LNSSAPGAPQ GQSRLPAQLS PATAPPPHGM MPARKRFRTK FTAEQKQRMQ ELSERLGWRL QKRDEGVVDE WCRDIGVSKG VFKVWMHNNK HNYLGGHSAR
301: RSASAAASSA ATTPTAPAAG GPFRLSPATG APAPAPFNPS VSHSSPAPTT TGFNMNGTAS SASTATTTAT PSPIFAAGHK LNGASSPQSA
001: MDLSSKPQQQ LLNSLPIAGE LTVTGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
101: TESPPSRHVS SPVPCSYYTS APPHHVILSL SSGFPGPSDQ DPTVVRSENS SRGAMRKRTR TKFTPEQKIK MRAFAEKAGW KINGCDEKSV REFCNEVGIE
201: RGVLKVWMHN NKYSLLNGKI REIEHGLCLN THSNDGDGSS SS
Arabidopsis Description
ZHD11Zinc-finger homeodomain protein 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.