Factsheet for TraesCS4D01G343300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G087700.1
TraesCS1B01G106800.1
TraesCS1D01G064300.1
TraesCS3A01G308700.1
TraesCS5A01G227100.1
TraesCS5B01G225700.1
TraesCS5D01G234600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18196.1	TraesCS1A01G087700.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS1B01G106800.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS1D01G064300.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS3A01G308700.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS5A01G227100.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS5B01G225700.1	AT5G15210.1	18974936
AT2G18196.1	TraesCS5D01G234600.1	AT5G15210.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G516900.1	Wheat	plastid	100.0	100.0
TraesCS4B01G348900.1	Wheat	plastid	98.46	98.46
Os03t0120400-01	Rice	plastid	85.13	86.01
EER92967	Sorghum	plastid	82.56	82.99
GSMUA_Achr11P...	Banana	cytosol	55.38	81.82
Zm00001d027405_P001	Maize	plastid	80.0	80.41
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	49.74	68.31
PGSC0003DMT400079287	Potato	cytosol	33.33	67.01
HORVU4Hr1G085090.2	Barley	plastid	96.92	66.08
GSMUA_Achr11P...	Banana	cytosol	61.03	64.32
GSMUA_Achr1P00790_001	Banana	cytosol	64.62	64.29
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	60.51	61.78
KRH34236	Soybean	cytosol	54.36	59.55
CDY13354	Canola	cytosol	54.36	59.55
CDX67533	Canola	cytosol	54.36	59.55
Bra028528.1-P	Field mustard	cytosol	54.36	59.55
PGSC0003DMT400079324	Potato	endoplasmic reticulum	54.36	58.89
AT2G18196.1	Thale cress	plastid	53.33	58.43
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	53.33	58.1
KRG92555	Soybean	cytosol	52.82	57.87
CDX99542	Canola	plastid	51.28	54.95
Bra037919.1-P	Field mustard	plastid	51.28	54.95
CDX86861	Canola	plastid	51.28	54.95
PGSC0003DMT400012844	Potato	plastid	51.79	54.89
AT4G10465.1	Thale cress	plastid	50.26	53.55
CDX85985	Canola	mitochondrion	32.31	52.5
TraesCS1D01G204100.1	Wheat	cytosol, plastid	49.23	48.73
TraesCS2D01G285700.1	Wheat	cytosol	30.26	39.07
TraesCS5D01G250700.1	Wheat	cytosol	29.74	38.16
TraesCS6D01G240700.1	Wheat	mitochondrion	29.23	38.0
TraesCS3D01G209500.1	Wheat	cytosol	29.23	37.75
TraesCS4D01G102000.1	Wheat	mitochondrion, plastid	26.67	35.14
TraesCS5D01G199500.1	Wheat	cytosol	28.72	35.0
TraesCS2D01G063000.1	Wheat	cytosol, plastid	27.18	34.19
TraesCS2D01G168000.1	Wheat	cytosol	27.69	33.33
TraesCS3D01G295000.1	Wheat	cytosol	24.62	32.43
TraesCS6D01G282300.1	Wheat	cytosol, mitochondrion	25.13	30.43
TraesCS6D01G049600.1	Wheat	cytosol	23.08	28.3
TraesCS7D01G333800.1	Wheat	cytosol	24.1	27.49
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	22.05	26.71

Protein Annotations

EnsemblPlants:TraesCS4D01G343300.1	EnsemblPlantsGene:TraesCS4D01G343300	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810
GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PANTHER:PTHR22814	PANTHER:PTHR22814:SF280	PFAM:PF00403	PFscan:PS50846	SEG:seg	SUPFAM:SSF55008
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:499403386..499404566

Molecular Weight (calculated)

22137.0 Da

IEP (calculated)

8.896

GRAVY (calculated)

-0.710

Length

195 amino acids

Sequence
(BLAST)

001: MSVSSVLSSF LYGCFNPAGG RYHHHRAGAY YHSSHPTSAD TMYYNQSGFA GGRRMGRSSR PLSLQTVELK VRMCCSGCAR VVKHALTKLR GVDSVEVEVE
101: MEKVTVTGYV ERHRVLKEVR RAGKKAEFWP NPDQPLHFTT AKDYFHDQES FRPSYNYYRH GYNGDKHGHL PEPHRGSDPV SNMFNDDDVN ACSIM

Best Arabidopsis Sequence Match ( AT2G18196.1 )
(BLAST)

001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM

Arabidopsis Description

HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.