Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G332000.2 | Wheat | cytosol | 91.93 | 91.36 |
| KXG30743 | Sorghum | plastid | 63.35 | 57.63 |
| Zm00001d018075_P001 | Maize | mitochondrion | 63.35 | 55.14 |
| TraesCS5D01G199500.1 | Wheat | cytosol | 44.1 | 44.38 |
| TraesCS4D01G102000.1 | Wheat | mitochondrion, plastid | 40.37 | 43.92 |
| TraesCS2D01G063000.1 | Wheat | cytosol, plastid | 40.99 | 42.58 |
| TraesCS2D01G168000.1 | Wheat | cytosol | 42.24 | 41.98 |
| TraesCS6D01G049600.1 | Wheat | cytosol | 39.13 | 39.62 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 35.4 | 37.75 |
| TraesCS5D01G250700.1 | Wheat | cytosol | 35.4 | 37.5 |
| TraesCS2D01G285700.1 | Wheat | cytosol | 34.16 | 36.42 |
| TraesCS7D01G379100.1 | Wheat | mitochondrion, plastid | 34.78 | 34.78 |
| TraesCS6D01G240700.1 | Wheat | mitochondrion | 26.71 | 28.67 |
| TraesCS3D01G295000.1 | Wheat | cytosol | 25.47 | 27.7 |
| TraesCS7D01G333800.1 | Wheat | cytosol | 28.57 | 26.9 |
| TraesCS4D01G343300.1 | Wheat | plastid | 30.43 | 25.13 |
| TraesCS1D01G204100.1 | Wheat | cytosol, plastid | 27.95 | 22.84 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G282300.1 | EnsemblPlantsGene:TraesCS6D01G282300 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF145 | PFAM:PF00403 | PFscan:PS50846 | SEG:seg | SUPFAM:SSF55008 |
| TIGR:cd00371 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:389698105..389699018
Molecular Weight (calculated)
17474.8 Da
IEP (calculated)
10.611
GRAVY (calculated)
-0.676
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGIKQLLA SLLGAVGGGQ RGAKKESTRP QPQTVELRVR MDCERCERQV KKALAGMRGV ERVEVNRKQQ RVTVTGVVDP HKVLRRAQST GKKAELWPRN
101: HHHPGYDDNS AAVTAHYGAI GAAQAHGRWA PSPYRRNADA ASAEQIASLF SDENPNACSV M
101: HHHPGYDDNS AAVTAHYGAI GAAQAHGRWA PSPYRRNADA ASAEQIASLF SDENPNACSV M
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Arabidopsis Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.