Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G244000.1 | Wheat | cytosol | 99.34 | 99.34 |
| TraesCS5B01G242000.1 | Wheat | cytosol | 97.37 | 97.37 |
| HORVU5Hr1G069380.2 | Barley | cytosol | 95.39 | 95.39 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 80.26 | 80.79 |
| TraesCS2D01G285700.1 | Wheat | cytosol | 76.97 | 77.48 |
| EES14354 | Sorghum | cytosol | 75.66 | 76.16 |
| Zm00001d052760_P001 | Maize | cytosol | 75.0 | 75.5 |
| Zm00001d034978_P001 | Maize | cytosol | 74.34 | 74.83 |
| Os01t0507700-01 | Rice | plasma membrane | 71.71 | 72.19 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 31.58 | 55.81 |
| Bra009662.1-P | Field mustard | cytosol | 42.76 | 53.72 |
| KRH60697 | Soybean | cytosol | 53.95 | 53.25 |
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 41.45 | 52.07 |
| KRH29001 | Soybean | cytosol | 53.29 | 51.92 |
| CDX88005 | Canola | cytosol | 49.34 | 51.72 |
| CDY07874 | Canola | cytosol | 49.34 | 51.72 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 52.63 | 51.61 |
| PGSC0003DMT400009390 | Potato | cytosol | 53.95 | 51.57 |
| CDY12089 | Canola | cytosol | 51.32 | 50.98 |
| CDX90282 | Canola | cytosol | 50.66 | 50.33 |
| Bra010738.1-P | Field mustard | cytosol | 50.66 | 50.33 |
| PGSC0003DMT400015784 | Potato | cytosol | 50.66 | 50.33 |
| TraesCS6D01G049600.1 | Wheat | cytosol | 52.63 | 50.31 |
| Solyc02g083550.1.1 | Tomato | cytosol | 52.63 | 50.31 |
| AT4G38580.1 | Thale cress | cytosol | 50.0 | 49.67 |
| Solyc01g111600.2.1 | Tomato | nucleus | 50.0 | 49.67 |
| AT5G66110.1 | Thale cress | cytosol | 48.03 | 49.66 |
| CDY65011 | Canola | cytosol | 49.34 | 49.02 |
| Bra033570.1-P | Field mustard | cytosol | 49.34 | 49.02 |
| VIT_04s0023g03890.t01 | Wine grape | cytosol | 51.32 | 48.75 |
| CDX72748 | Canola | cytosol | 48.03 | 47.71 |
| TraesCS4D01G102000.1 | Wheat | mitochondrion, plastid | 46.05 | 47.3 |
| TraesCS2D01G063000.1 | Wheat | cytosol, plastid | 48.03 | 47.1 |
| TraesCS5D01G199500.1 | Wheat | cytosol | 48.68 | 46.25 |
| Bra011581.1-P | Field mustard | cytosol | 45.39 | 45.1 |
| CDY52653 | Canola | cytosol | 45.39 | 45.1 |
| CDX69108 | Canola | cytosol | 45.39 | 45.1 |
| AT4G35060.1 | Thale cress | cytosol | 44.74 | 44.44 |
| TraesCS2D01G168000.1 | Wheat | cytosol | 46.71 | 43.83 |
| Bra034669.1-P | Field mustard | cytosol | 43.42 | 42.86 |
| CDX76309 | Canola | cytosol | 43.42 | 42.86 |
| CDY17504 | Canola | cytosol | 42.76 | 42.21 |
| TraesCS7D01G379100.1 | Wheat | mitochondrion, plastid | 43.42 | 40.99 |
| KRH28829 | Soybean | cytosol | 29.61 | 37.19 |
| TraesCS6D01G282300.1 | Wheat | cytosol, mitochondrion | 37.5 | 35.4 |
| TraesCS6D01G240700.1 | Wheat | mitochondrion | 31.58 | 32.0 |
| TraesCS4D01G343300.1 | Wheat | plastid | 38.16 | 29.74 |
| TraesCS3D01G295000.1 | Wheat | cytosol | 27.63 | 28.38 |
| TraesCS1D01G204100.1 | Wheat | cytosol, plastid | 34.21 | 26.4 |
| TraesCS7D01G333800.1 | Wheat | cytosol | 28.95 | 25.73 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G250700.1 | EnsemblPlantsGene:TraesCS5D01G250700 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF176 | PFAM:PF00403 | PFscan:PS50846 | SEG:seg | SUPFAM:SSF55008 |
| TIGR:cd00371 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:356900987..356901834
Molecular Weight (calculated)
16960.9 Da
IEP (calculated)
10.430
GRAVY (calculated)
-0.296
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALDHLSRL CNLTHTREAI RIKKRRPLTT VNIKVKMDCE GCERRVKNAV KSIRGVTAVV VNRKISKVTV TGYVEPRKVL ARVKRTGKTT ADMWPYVPYT
101: VATYPYVGGS YDKKAPAGLV RNVPQAMADP AAPEVKYMNM FNDEDVTACT VM
101: VATYPYVGGS YDKKAPAGLV RNVPQAMADP AAPEVKYMNM FNDEDVTACT VM
001: MGALNYLSEY FSNHFYVSIR KRKKRKVMQV KIDCDGCERK IKNAVSSIKG AKSVEVNRKM HKVTVSGYVD PKKVLKTVQS TGKKKAELWP YVPYTMVAYP
101: YAAGAYDKRA PPGFVRKSEQ AQAQPGSTDD KLMSLFSDEN PNACTVM
101: YAAGAYDKRA PPGFVRKSEQ AQAQPGSTDD KLMSLFSDEN PNACTVM
Arabidopsis Description
HIPP22HIPP22 [Source:UniProtKB/TrEMBL;Acc:A0A178WF89]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.