Factsheet for Bra010738.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
peroxisome 1
plastid 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra019027.1-P
Bra026307.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38580.1	Bra004399.1-P	AT1G69600.1	18974936
AT4G38580.1	Bra007869.1-P	AT1G69600.1	18974936
AT4G38580.1	Bra019027.1-P	AT4G27780.1	18823312
AT4G38580.1	Bra026307.1-P	AT4G27780.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90282	Canola	cytosol	100.0	100.0
CDY12089	Canola	cytosol	98.69	98.69
Bra033570.1-P	Field mustard	cytosol	98.04	98.04
AT4G38580.1	Thale cress	cytosol	95.42	95.42
Solyc01g111600.2.1	Tomato	nucleus	84.97	84.97
PGSC0003DMT400015784	Potato	cytosol	84.31	84.31
VIT_03s0038g02440.t01	Wine grape	cytosol	81.7	80.65
Bra011581.1-P	Field mustard	cytosol	75.16	75.16
GSMUA_Achr4P25770_001	Banana	cytosol, plastid	73.2	72.26
Bra034669.1-P	Field mustard	cytosol	72.55	72.08
Bra009662.1-P	Field mustard	cytosol	55.56	70.25
GSMUA_Achr1P02370_001	Banana	cytosol, plastid	68.63	67.74
TraesCS2B01G077100.1	Wheat	cytosol, plastid	65.36	64.52
TraesCS2A01G064900.1	Wheat	nucleus	65.36	64.52
TraesCS2D01G063000.1	Wheat	cytosol, plastid	65.36	64.52
EES11880	Sorghum	cytosol	65.36	64.52
Zm00001d004138_P001	Maize	cytosol	65.36	64.52
Os04t0244800-01	Rice	plasma membrane	64.71	63.87
TraesCS6A01G043000.1	Wheat	cytosol	63.4	61.01
TraesCS6B01G059000.1	Wheat	cytosol	63.4	61.01
TraesCS6D01G049600.1	Wheat	cytosol	62.75	60.38
Os03t0156600-01	Rice	cytosol	60.13	59.35
EER92834	Sorghum	cytosol	58.82	57.69
Bra016162.1-P	Field mustard	cytosol	55.56	56.67
Zm00001d027720_P001	Maize	cytosol	56.21	55.13
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	57.52	54.66
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	57.52	54.66
HORVU7Hr1G090970.1	Barley	mitochondrion	56.21	54.09
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	56.21	53.42
EES14354	Sorghum	cytosol	51.63	52.32
Os01t0507700-01	Rice	plasma membrane	51.63	52.32
Bra012353.1-P	Field mustard	cytosol	51.63	51.97
Zm00001d034978_P001	Maize	cytosol	50.98	51.66
TraesCS2A01G287200.1	Wheat	cytosol	50.33	50.99
TraesCS2D01G285700.1	Wheat	cytosol	50.33	50.99
TraesCS2B01G304100.1	Wheat	cytosol	50.33	50.99
TraesCS5D01G250700.1	Wheat	cytosol	50.33	50.66
TraesCS5A01G244000.1	Wheat	cytosol	50.33	50.66
Bra024556.1-P	Field mustard	cytosol	48.37	50.34
TraesCS3A01G206100.1	Wheat	cytosol	49.67	50.33
TraesCS5B01G242000.1	Wheat	cytosol	49.67	50.0
HORVU5Hr1G069380.2	Barley	cytosol	49.67	50.0
TraesCS3D01G209500.1	Wheat	cytosol	49.02	49.67
HORVU3Hr1G049780.1	Barley	cytosol	49.02	49.67
Zm00001d052760_P001	Maize	cytosol	49.02	49.67
Bra011840.1-P	Field mustard	cytosol	48.37	46.84
Bra013976.1-P	Field mustard	cytosol	45.1	46.31
Bra037865.1-P	Field mustard	cytosol	45.1	46.0
Bra023619.1-P	Field mustard	cytosol	44.44	45.64
TraesCS3B01G238100.1	Wheat	cytosol	28.1	43.0
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	61.44	41.78
Bra018022.1-P	Field mustard	cytosol	30.72	34.06
Bra007280.1-P	Field mustard	cytosol	32.03	31.01
Bra030119.1-P	Field mustard	cytosol	28.1	30.5
Bra014664.1-P	Field mustard	cytosol	26.8	30.37
HORVU2Hr1G011060.1	Barley	nucleus, plastid	29.41	29.03
Bra032428.1-P	Field mustard	cytosol	28.1	27.56
Bra037919.1-P	Field mustard	plastid	32.68	27.47
Bra028528.1-P	Field mustard	cytosol	30.07	25.84

Protein Annotations

EnsemblPlants:Bra010738.1	EnsemblPlants:Bra010738.1-P	EnsemblPlantsGene:Bra010738	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF14	PFAM:PF00403	SUPFAM:SSF55008	UniParc:UPI0002546B58
UniProt:M4D2N5	MapMan:35.1	:	:	:	:

Description

AT4G38580 (E=9e-084) ATFP6, HIPP26 | ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding

Coordinates

chrA08:-:16195882..16197067

Molecular Weight (calculated)

17040.5 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.455

Length

153 amino acids

Sequence
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRRQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVSLEP KAHKVTVVGY VEPNKVVSRM AHRTGKKVEL WPYVPYDVVA
101: HPYASGVYDK KAPSGYVRRA DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Best Arabidopsis Sequence Match ( AT4G38580.2 )
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Arabidopsis Description

HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.