Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G005790.3 | |
| HORVU2Hr1G077940.1 | |
| HORVU6Hr1G050140.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38580.1 | HORVU0Hr1G005790.3 | AT4G27780.1 | 18823312 |
| AT5G66110.1 | HORVU2Hr1G077940.1 | AT1G54060.1 | 21798944 |
| AT5G66110.1 | HORVU6Hr1G050140.1 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G064900.1 | Wheat | nucleus | 46.45 | 46.45 |
| TraesCS2D01G063000.1 | Wheat | cytosol, plastid | 45.81 | 45.81 |
| TraesCS2B01G077100.1 | Wheat | cytosol, plastid | 45.81 | 45.81 |
| EES11880 | Sorghum | cytosol | 43.87 | 43.87 |
| Zm00001d004138_P001 | Maize | cytosol | 43.23 | 43.23 |
| Os04t0244800-01 | Rice | plasma membrane | 43.23 | 43.23 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 18.06 | 32.56 |
| KRH60697 | Soybean | cytosol | 30.32 | 30.52 |
| AT4G38580.1 | Thale cress | cytosol | 29.68 | 30.07 |
| GSMUA_Achr1P02370_001 | Banana | cytosol, plastid | 29.68 | 29.68 |
| GSMUA_Achr4P25770_001 | Banana | cytosol, plastid | 29.68 | 29.68 |
| KRH29001 | Soybean | cytosol | 29.68 | 29.49 |
| CDX90282 | Canola | cytosol | 29.03 | 29.41 |
| Bra010738.1-P | Field mustard | cytosol | 29.03 | 29.41 |
| CDX72748 | Canola | cytosol | 28.39 | 28.76 |
| CDY12089 | Canola | cytosol | 28.39 | 28.76 |
| Bra033570.1-P | Field mustard | cytosol | 28.39 | 28.76 |
| CDY65011 | Canola | cytosol | 28.39 | 28.76 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 28.39 | 28.39 |
| Solyc01g111600.2.1 | Tomato | nucleus | 27.74 | 28.1 |
| PGSC0003DMT400015784 | Potato | cytosol | 27.74 | 28.1 |
| AT4G35060.1 | Thale cress | cytosol | 27.74 | 28.1 |
| HORVU7Hr1G090970.1 | Barley | mitochondrion | 28.39 | 27.67 |
| Bra011581.1-P | Field mustard | cytosol | 27.1 | 27.45 |
| CDY52653 | Canola | cytosol | 27.1 | 27.45 |
| HORVU5Hr1G057730.1 | Barley | cytosol | 28.39 | 27.33 |
| CDX76309 | Canola | cytosol | 27.1 | 27.27 |
| Bra034669.1-P | Field mustard | cytosol | 27.1 | 27.27 |
| CDY17504 | Canola | cytosol | 27.1 | 27.27 |
| CDX69108 | Canola | cytosol | 26.45 | 26.8 |
| CDX88005 | Canola | cytosol | 23.87 | 25.52 |
| CDY07874 | Canola | cytosol | 23.87 | 25.52 |
| VIT_04s0023g03890.t01 | Wine grape | cytosol | 25.81 | 25.0 |
| AT5G66110.1 | Thale cress | cytosol | 23.23 | 24.49 |
| PGSC0003DMT400009390 | Potato | cytosol | 24.52 | 23.9 |
| Solyc02g083550.1.1 | Tomato | cytosol | 23.87 | 23.27 |
| HORVU6Hr1G009000.1 | Barley | cytosol, plastid, vacuole | 32.26 | 22.22 |
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 16.77 | 21.49 |
| HORVU3Hr1G049780.1 | Barley | cytosol | 20.65 | 21.19 |
| Bra009662.1-P | Field mustard | cytosol | 16.13 | 20.66 |
| HORVU5Hr1G069380.2 | Barley | cytosol | 20.0 | 20.39 |
| HORVU4Hr1G017070.3 | Barley | cytosol | 21.29 | 19.41 |
| KRH28829 | Soybean | cytosol | 11.61 | 14.88 |
| HORVU3Hr1G072940.2 | Barley | cytosol | 14.19 | 14.01 |
| HORVU7Hr1G080490.1 | Barley | cytosol | 14.84 | 13.29 |
| HORVU4Hr1G085090.2 | Barley | plastid | 16.77 | 9.09 |
| HORVU6Hr1G066220.1 | Barley | cytosol | 9.03 | 7.57 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G011060.1 | EnsemblPlantsGene:HORVU2Hr1G011060 | ncoils:Coil | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF168 | SEG:seg |
| UniParc:UPI000B472970 | UniProt:A0A287H2B3 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:21930361..21931428
Molecular Weight (calculated)
8448.3 Da
IEP (calculated)
8.991
GRAVY (calculated)
-0.334
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIVDVVSEY CSLPRTRRHM KKRKQFQTVE MKVRIDCEGC ERKVKKALDD MKXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSTEARY TAAFSDENPN ACSVM
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSTEARY TAAFSDENPN ACSVM
001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
Arabidopsis Description
HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.