Factsheet for Os04t0244800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0565000-01
Os04t0445600-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66110.1	Os02t0565000-01	AT1G54060.1	21798944
AT5G66110.1	Os04t0445600-00	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11880	Sorghum	cytosol	93.55	93.55
Zm00001d004138_P001	Maize	cytosol	92.9	92.9
TraesCS2A01G064900.1	Wheat	nucleus	91.61	91.61
TraesCS2D01G063000.1	Wheat	cytosol, plastid	90.32	90.32
TraesCS2B01G077100.1	Wheat	cytosol, plastid	90.32	90.32
TraesCS6B01G059000.1	Wheat	cytosol	76.77	74.84
TraesCS6A01G043000.1	Wheat	cytosol	76.77	74.84
TraesCS6D01G049600.1	Wheat	cytosol	76.13	74.21
GSMUA_Achr4P25770_001	Banana	cytosol, plastid	74.19	74.19
GSMUA_Achr1P02370_001	Banana	cytosol, plastid	71.61	71.61
HORVU7Hr1G090970.1	Barley	mitochondrion	70.32	68.55
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	70.32	67.7
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	70.32	67.7
KRH60697	Soybean	cytosol	66.45	66.88
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	69.03	66.46
AT4G38580.1	Thale cress	cytosol	65.16	66.01
Bra009662.1-P	Field mustard	cytosol	50.97	65.29
Os03t0156600-01	Rice	cytosol	65.16	65.16
KRH29001	Soybean	cytosol	65.16	64.74
Bra033570.1-P	Field mustard	cytosol	63.87	64.71
CDY65011	Canola	cytosol	63.87	64.71
CDX90282	Canola	cytosol	63.87	64.71
Bra010738.1-P	Field mustard	cytosol	63.87	64.71
VIT_03s0038g02440.t01	Wine grape	cytosol	64.52	64.52
PGSC0003DMT400015784	Potato	cytosol	63.23	64.05
Solyc01g111600.2.1	Tomato	nucleus	63.23	64.05
CDY12089	Canola	cytosol	63.23	64.05
CDX88005	Canola	cytosol	59.35	63.45
CDY07874	Canola	cytosol	59.35	63.45
CDX72748	Canola	cytosol	62.58	63.4
VIT_04s0023g03910.t01	Wine grape	cytosol	49.03	62.81
AT5G66110.1	Thale cress	cytosol	59.35	62.59
PGSC0003DMT400009390	Potato	cytosol	60.65	59.12
Bra011581.1-P	Field mustard	cytosol	57.42	58.17
CDY52653	Canola	cytosol	57.42	58.17
AT4G35060.1	Thale cress	cytosol	56.77	57.52
CDX69108	Canola	cytosol	56.77	57.52
Bra034669.1-P	Field mustard	cytosol	56.77	57.14
CDY17504	Canola	cytosol	56.77	57.14
CDX76309	Canola	cytosol	56.77	57.14
VIT_04s0023g03890.t01	Wine grape	cytosol	58.71	56.88
Solyc02g083550.1.1	Tomato	cytosol	58.06	56.6
KRH24318	Soybean	cytosol, nucleus, plastid	29.68	53.49
Os01t0507700-01	Rice	plasma membrane	50.32	51.66
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	74.19	51.11
Os09t0364800-01	Rice	cytosol, nucleus	36.77	50.89
Os08t0403300-00	Rice	cytosol	48.39	50.0
Os03t0383900-01	Rice	cytosol	48.39	47.77
HORVU2Hr1G011060.1	Barley	nucleus, plastid	43.23	43.23
KRH28829	Soybean	cytosol	33.55	42.98
Os01t0758000-00	Rice	cytosol	31.61	32.03
Os03t0120400-01	Rice	plastid	34.19	27.46
Os10t0537400-00	Rice	cytosol	31.61	26.49
Os06t0542300-01	Rice	cytosol	29.03	24.59

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EntrezGene:4331670	EntrezGene:4335295	ProteinID:AAM51837.1	ProteinID:ABF94059.1
EMBL:AK105367	EMBL:AK121488	ProteinID:BAF10924.1	ProteinID:BAF14218.1	ProteinID:BAS82367.1	ProteinID:BAS88244.1
ProteinID:CAD39925.2	ProteinID:EAZ29967.1	ProteinID:EAZ29969.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	EnsemblPlantsGene:Os04g0244800	EnsemblPlants:Os04t0244800-01	PFAM:PF00403	PFscan:PS50846
PANTHER:PTHR22814	PANTHER:PTHR22814:SF168	UniProt:Q7XWS9	SUPFAM:SSF55008	UniParc:UPI000021C8C6	RefSeq:XP_015633091.1
RefSeq:XP_015637237.1	:	:	:	:	:

Description

Heavy metal transport/detoxification protein domain containing protein. (Os04t0244800-01)

Coordinates

chr4:-:9368053..9369130

Molecular Weight (calculated)

17220.7 Da

IEP (calculated)

9.947

GRAVY (calculated)

-0.475

Length

155 amino acids

Sequence
(BLAST)

001: MGIVDVVSEF CSVPRTRRHL KKRKQFQTVE MKVRIDCEGC ERKIKKALED MKGVSSVEVT AKQNKVTVTG YVDAGKVMRR VAYKTGKRVE PWPYVPYDTV
101: AHPYAPGAYD KKAPAGYVRN VVSDPSAAPL ARASSTEVRY TAAFSDENPN ACSVM

Best Arabidopsis Sequence Match ( AT4G38580.2 )
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Arabidopsis Description

HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.