Factsheet for Os10t0537400-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0438400-01
Os09t0414600-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18196.1	Os08t0438400-01	AT5G15210.1	18974936
AT2G18196.1	Os09t0414600-02	AT5G15210.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G200700.1	Wheat	cytosol, plastid	73.51	69.74
TraesCS1D01G204100.1	Wheat	cytosol, plastid	73.51	69.04
TraesCS1B01G215100.1	Wheat	cytosol, plastid	73.51	69.04
GSMUA_Achr11P...	Banana	cytosol	48.11	67.42
KXG39011	Sorghum	cytosol	72.43	64.42
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	48.11	62.68
PGSC0003DMT400079287	Potato	cytosol	29.73	56.7
Os03t0120400-01	Rice	plastid	58.92	56.48
GSMUA_Achr11P...	Banana	cytosol	53.51	53.51
KRG92555	Soybean	cytosol	48.65	50.56
GSMUA_Achr1P00790_001	Banana	cytosol	52.97	50.0
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	51.35	49.74
KRH34236	Soybean	cytosol	47.57	49.44
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	47.03	48.6
CDX85985	Canola	mitochondrion	30.81	47.5
PGSC0003DMT400079324	Potato	endoplasmic reticulum	45.95	47.22
AT2G18196.1	Thale cress	plastid	45.41	47.19
PGSC0003DMT400012844	Potato	plastid	46.49	46.74
CDY13354	Canola	cytosol	44.86	46.63
CDX67533	Canola	cytosol	44.86	46.63
Bra028528.1-P	Field mustard	cytosol	44.86	46.63
CDX99542	Canola	plastid	44.86	45.6
CDX86861	Canola	plastid	44.86	45.6
Bra037919.1-P	Field mustard	plastid	44.86	45.6
AT4G10465.1	Thale cress	plastid	44.86	45.36
Os03t0383900-01	Rice	cytosol	29.19	34.39
Os01t0507700-01	Rice	plasma membrane	27.57	33.77
Os08t0403300-00	Rice	cytosol	26.49	32.67
Os04t0244800-01	Rice	plasma membrane	26.49	31.61
Os03t0156600-01	Rice	cytosol	25.95	30.97
Os06t0542300-01	Rice	cytosol	27.03	27.32
Os09t0364800-01	Rice	cytosol, nucleus	16.22	26.79
Os01t0758000-00	Rice	cytosol	21.08	25.49

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	ProteinID:AAM76363.1	ProteinID:AAP54818.1	ProteinID:BAT11831.1	ProteinID:EAZ16817.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872
GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	EnsemblPlantsGene:Os10g0537400
EnsemblPlants:Os10t0537400-00	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF141	UniProt:Q8LNN6
SUPFAM:SSF55008	UniParc:UPI00000A0E7E	SEG:seg	:	:	:

Description

Similar to metal ion binding protein. (Os10t0537400-00)

Coordinates

chr10:+:20935118..20935819

Molecular Weight (calculated)

20672.4 Da

IEP (calculated)

9.063

GRAVY (calculated)

-0.594

Length

185 amino acids

Sequence
(BLAST)

001: MADIVSDVFL SFFCCCYYPP GGHRGVGAHN DTALRRRRGG AGRSSSRPPV SLQTVELKVR MCCEGCERVV RSALANLRGV DSVEVDVAME KVRVTGYVDR
101: GRVLREVRRS GKKAEFWPSG GTPRRFTSEK EYFRDGEAYR GSYNYHRRGY GDGDRHGWMR EPARGADAVS NMFNDDDVSA ACAIM

Best Arabidopsis Sequence Match ( AT2G18196.1 )
(BLAST)

001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM

Arabidopsis Description

HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.