CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15050
KXG35632
OQU86730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18196.1	EES15050	AT5G15210.1	18974936
AT2G18196.1	KXG35632	AT5G15210.1	18974936
AT2G18196.1	OQU86730	AT5G15210.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0537400-00	Rice	cytosol	64.42	72.43
GSMUA_Achr11P...	Banana	cytosol	41.83	65.91
TraesCS1A01G200700.1	Wheat	cytosol, plastid	59.62	63.59
TraesCS1B01G215100.1	Wheat	cytosol, plastid	60.1	63.45
TraesCS1D01G204100.1	Wheat	cytosol, plastid	59.13	62.44
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	39.9	58.45
PGSC0003DMT400079287	Potato	cytosol	26.44	56.7
EER92967	Sorghum	plastid	51.92	55.67
PGSC0003DMT400079324	Potato	endoplasmic reticulum	43.27	50.0
GSMUA_Achr11P...	Banana	cytosol	44.23	49.73
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	42.79	49.72
GSMUA_Achr1P00790_001	Banana	cytosol	45.67	48.47
KRH34236	Soybean	cytosol	41.35	48.31
KRG92555	Soybean	cytosol	41.35	48.31
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	44.23	48.17
CDX67533	Canola	cytosol	39.9	46.63
CDY13354	Canola	cytosol	39.9	46.63
Bra028528.1-P	Field mustard	cytosol	39.9	46.63
AT2G18196.1	Thale cress	plastid	39.42	46.07
CDX85985	Canola	mitochondrion	25.48	44.17
PGSC0003DMT400012844	Potato	plastid	38.94	44.02
Bra037919.1-P	Field mustard	plastid	37.98	43.41
CDX99542	Canola	plastid	37.98	43.41
CDX86861	Canola	plastid	37.98	43.41
AT4G10465.1	Thale cress	plastid	37.98	43.17
EES14354	Sorghum	cytosol	24.52	33.77
EES13808	Sorghum	cytosol	23.08	33.1
EER96651	Sorghum	cytosol	25.48	32.92
OQU85626	Sorghum	mitochondrion	25.48	32.12
KXG30743	Sorghum	plastid	25.48	29.94
EER99736	Sorghum	cytosol	24.04	29.76
EES11880	Sorghum	cytosol	21.63	29.03
EER92834	Sorghum	cytosol	21.15	28.21
EES03638	Sorghum	cytosol	19.71	25.47
EER89887	Sorghum	cytosol	23.08	23.76

Protein Annotations

EnsemblPlants:KXG39011	EnsemblPlantsGene:SORBI_3001G313600	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810
GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PANTHER:PTHR22814	PANTHER:PTHR22814:SF141	PFAM:PF00403	PFscan:PS50846	ProteinID:KXG39011	ProteinID:KXG39011.1
SEG:seg	SUPFAM:SSF55008	UniParc:UPI00081ACC12	UniProt:A0A1B6QM65	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:-:60075190..60076502

Molecular Weight (calculated)

23446.5 Da

IEP (calculated)

8.559

GRAVY (calculated)

-0.652

Length

208 amino acids

Sequence
(BLAST)

001: MLTPCFGTAC SSHTCDMADV VSDLVLSFFC CCFYAPGDNH RGVGTHHHYS GGHGRDAAYH HHHRGAGNRS RSVSLQTVEL KVRMCCDGCE RVVRQALQNL
101: RGVDRVDVNV PMEKVTVTGY VDRARVLQEV RRSGKKAEFW PSGGTSLWFT SPRSYFRDDS YRRDSYNYRR RGYSDGDRHG RMREPARGAG PVGNMFNDDD
201: VDAACRIM

Best Arabidopsis Sequence Match ( AT2G18196.1 )
(BLAST)

001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM

Arabidopsis Description

HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.