Factsheet for PGSC0003DMT400012844

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079287	Potato	cytosol	40.76	77.32
GSMUA_Achr11P...	Banana	cytosol	50.54	70.45
PGSC0003DMT400079324	Potato	endoplasmic reticulum	61.96	63.33
GSMUA_Achr11P...	Banana	cytosol	55.43	55.14
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	55.43	53.4
Os03t0120400-01	Rice	plastid	55.43	52.85
EER92967	Sorghum	plastid	54.89	52.06
TraesCS5A01G516900.1	Wheat	plastid	54.89	51.79
TraesCS4D01G343300.1	Wheat	plastid	54.89	51.79
TraesCS4B01G348900.1	Wheat	plastid	54.35	51.28
GSMUA_Achr1P00790_001	Banana	cytosol	54.35	51.02
Zm00001d027405_P001	Maize	plastid	52.17	49.48
Os10t0537400-00	Rice	cytosol	46.74	46.49
TraesCS1B01G215100.1	Wheat	cytosol, plastid	42.93	40.1
TraesCS1D01G204100.1	Wheat	cytosol, plastid	42.93	40.1
TraesCS1A01G200700.1	Wheat	cytosol, plastid	42.39	40.0
KXG39011	Sorghum	cytosol	44.02	38.94
PGSC0003DMT400026532	Potato	cytosol	22.83	38.89
PGSC0003DMT400037204	Potato	cytosol	27.17	35.97
PGSC0003DMT400078635	Potato	cytosol, plastid	28.8	35.81
HORVU4Hr1G085090.2	Barley	plastid	55.43	35.66
PGSC0003DMT400043033	Potato	cytosol	29.89	34.81
PGSC0003DMT400056666	Potato	cytosol	28.26	34.21
PGSC0003DMT400015350	Potato	cytosol	27.17	34.01
PGSC0003DMT400056199	Potato	cytosol	28.26	33.77
PGSC0003DMT400009390	Potato	cytosol	27.72	32.08
PGSC0003DMT400015784	Potato	cytosol	26.63	32.03
PGSC0003DMT400052612	Potato	cytosol, mitochondrion, nucleus	19.02	30.43
PGSC0003DMT400024479	Potato	cytosol, plastid	23.91	29.33
PGSC0003DMT400024481	Potato	cytosol, plastid	23.37	28.67

Protein Annotations

EntrezGene:102584462	Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810
GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
UniProt:M1A1V8	PFAM:PF00403	EnsemblPlantsGene:PGSC0003DMG400005000	PGSC:PGSC0003DMG400005000	EnsemblPlants:PGSC0003DMT400012844	PFscan:PS50846
PANTHER:PTHR22814	PANTHER:PTHR22814:SF280	SUPFAM:SSF55008	UniParc:UPI0002949169	RefSeq:XP_015170436.1	SEG:seg

Description

Metal ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005000]

Coordinates

chr12:-:53426340..53428739

Molecular Weight (calculated)

21286.6 Da

IEP (calculated)

9.642

GRAVY (calculated)

-0.539

Length

184 amino acids

Sequence
(BLAST)

001: MSLSIYIYSS NLFTNGKPIQ KLFGTVRSLL LYKAINNNNN NNMPRGRPLS LQTVELKVRM CCPGCERVVK DAVLKLRGVD SVEIDVEMEK VTIMGYVDRK
101: KVLKVVRRSG KRAEFWPYPN PPLYFTSSNN YFKDTTTEYK ESYNYWRHGY NATDKYGTLP ITQRGDDKVS NLFNDDNVYS CSIM

Best Arabidopsis Sequence Match ( AT2G18196.1 )
(BLAST)

001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM

Arabidopsis Description

HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.