Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006409 | |
| PGSC0003DMT400009054 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17450.1 | PGSC0003DMT400006409 | AT3G13710.1 | 21798944 |
| AT5G17450.1 | PGSC0003DMT400009054 | AT3G50910.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g091300.2.1 | Tomato | cytosol, plastid | 97.3 | 97.3 |
| VIT_14s0006g01800.t01 | Wine grape | cytosol | 75.0 | 76.03 |
| KRG93769 | Soybean | cytosol | 45.27 | 69.07 |
| GSMUA_Achr2P07910_001 | Banana | cytosol | 69.59 | 68.21 |
| KRG93786 | Soybean | cytosol, plastid | 43.92 | 67.01 |
| KRH76245 | Soybean | cytosol | 38.51 | 64.77 |
| GSMUA_Achr1P12840_001 | Banana | cytosol | 65.54 | 64.24 |
| PGSC0003DMT400015350 | Potato | cytosol | 63.51 | 63.95 |
| PGSC0003DMT400043033 | Potato | cytosol | 66.89 | 62.66 |
| KRG93169 | Soybean | cytosol | 60.81 | 62.5 |
| KRH15973 | Soybean | cytosol, plastid | 45.95 | 62.39 |
| AT5G17450.1 | Thale cress | cytosol | 61.49 | 61.07 |
| CDY38431 | Canola | cytosol | 61.49 | 61.07 |
| Bra013976.1-P | Field mustard | cytosol | 60.81 | 60.4 |
| CDY16919 | Canola | cytosol | 60.81 | 60.4 |
| KRH01671 | Soybean | cytosol | 58.78 | 60.0 |
| KRH70455 | Soybean | cytosol | 58.78 | 60.0 |
| Bra023619.1-P | Field mustard | cytosol | 60.14 | 59.73 |
| CDX85452 | Canola | cytosol | 60.14 | 59.73 |
| CDY55938 | Canola | cytosol | 60.14 | 59.73 |
| PGSC0003DMT400056666 | Potato | cytosol | 54.05 | 52.63 |
| PGSC0003DMT400015784 | Potato | cytosol | 51.35 | 49.67 |
| PGSC0003DMT400056199 | Potato | cytosol | 50.68 | 48.7 |
| PGSC0003DMT400009390 | Potato | cytosol | 52.03 | 48.43 |
| PGSC0003DMT400024481 | Potato | cytosol, plastid | 45.95 | 45.33 |
| PGSC0003DMT400024479 | Potato | cytosol, plastid | 45.27 | 44.67 |
| PGSC0003DMT400037204 | Potato | cytosol | 31.08 | 33.09 |
| PGSC0003DMT400079287 | Potato | cytosol | 20.95 | 31.96 |
| PGSC0003DMT400079324 | Potato | endoplasmic reticulum | 37.84 | 31.11 |
| PGSC0003DMT400026532 | Potato | cytosol | 21.62 | 29.63 |
| PGSC0003DMT400012844 | Potato | plastid | 35.81 | 28.8 |
| PGSC0003DMT400052612 | Potato | cytosol, mitochondrion, nucleus | 19.59 | 25.22 |
Protein Annotations
| EntrezGene:102599308 | Gene3D:3.30.70.100 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| UniProt:M1D0G8 | PFAM:PF00403 | EnsemblPlantsGene:PGSC0003DMG400030601 | PGSC:PGSC0003DMG400030601 | EnsemblPlants:PGSC0003DMT400078635 | PFscan:PS50846 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF110 | SUPFAM:SSF55008 | UniParc:UPI000295AB0C | RefSeq:XP_006357789.1 | SEG:seg |
Description
Metal ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030601]
Coordinates
chr2:+:41760071..41760891
Molecular Weight (calculated)
16949.7 Da
IEP (calculated)
10.489
GRAVY (calculated)
-0.423
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVLDYLSIF CTVTSRRRRT KRRPLQTVEI KVKMDCDGCE RRVKNAVTRM KGVKTVEVIR KQHRVIVSGY VDPARVLNRI KSTGKRAEMW PYVPYNLVSY
101: PYVAQAYDKK APSGFVKNVP QALITPNATE ERITHLFSDD NPNACSIM
101: PYVAQAYDKK APSGFVKNVP QALITPNATE ERITHLFSDD NPNACSIM
001: MGALNYLSEY FSNHFYVSIR KRKKRKVMQT VNIKVKIDCD GCERKIKNAV SSIKGAKSVE VNRKMHKVTV SGYVDPKKVL KTVQSTGKKK AELWPYVPYT
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM
Arabidopsis Description
HIPP22HIPP22 [Source:UniProtKB/TrEMBL;Acc:A0A178WF89]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.