CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08190
KRH10001
KRH23330
KRH28715
KRH44167
KRH47141
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17450.1	KRH10001	AT3G13710.1	21798944
AT5G17450.1	KRH23330	AT3G13710.1	21798944
AT5G17450.1	KRH44167	AT3G13710.1	21798944
AT5G17450.1	KRH47141	AT3G13710.1	21798944
AT5G17450.1	KRH08190	AT3G50910.1	21798944
AT5G17450.1	KRH28715	AT3G50910.1	21798944
AT5G17450.1	KRH69884	AT3G50910.1	21798944
AT5G17450.1	KRH76747	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70455	Soybean	cytosol	96.55	96.55
KRG93769	Soybean	cytosol	47.59	71.13
KRH76245	Soybean	cytosol	42.07	69.32
KRG93786	Soybean	cytosol, plastid	46.21	69.07
VIT_14s0006g01800.t01	Wine grape	cytosol	68.97	68.49
KRG93169	Soybean	cytosol	66.9	67.36
AT5G17450.1	Thale cress	cytosol	66.9	65.1
Bra013976.1-P	Field mustard	cytosol	66.21	64.43
Bra023619.1-P	Field mustard	cytosol	65.52	63.76
CDY55938	Canola	cytosol	65.52	63.76
CDY38431	Canola	cytosol	65.52	63.76
CDX85452	Canola	cytosol	65.52	63.76
KRH15973	Soybean	cytosol, plastid	47.59	63.3
CDY16919	Canola	cytosol	64.83	63.09
Solyc03g043640.2.1	Tomato	cytosol	63.45	62.59
Solyc02g091300.2.1	Tomato	cytosol, plastid	60.0	58.78
PGSC0003DMT400078635	Potato	cytosol, plastid	60.0	58.78
KRG90986	Soybean	cytosol, plastid	58.62	58.22
KRH35768	Soybean	cytosol, plastid	58.62	58.22
KRH38224	Soybean	cytosol	58.62	57.82
PGSC0003DMT400043033	Potato	cytosol	57.93	53.16
GSMUA_Achr2P07910_001	Banana	cytosol	55.17	52.98
GSMUA_Achr1P12840_001	Banana	cytosol	54.48	52.32
KRH43240	Soybean	cytosol	55.17	52.29
KRH59402	Soybean	cytosol	55.17	52.29
KRH60697	Soybean	cytosol	54.48	51.3
KRH29001	Soybean	cytosol	54.48	50.64
KRH24318	Soybean	cytosol, nucleus, plastid	28.28	47.67
KRH31264	Soybean	cytosol	50.34	47.1
KRG97609	Soybean	cytosol	50.34	46.5
KRH38229	Soybean	cytosol	46.21	45.58
KRH53129	Soybean	cytosol	44.14	42.95
KRH62410	Soybean	cytosol, plastid	44.14	42.95
KRH28829	Soybean	cytosol	33.1	39.67
KRH58951	Soybean	cytosol	35.86	37.14
KRH09015	Soybean	cytosol	33.79	35.51
KRH38480	Soybean	cytosol	28.97	35.29
KRH57823	Soybean	cytosol	34.48	33.78
KRH22286	Soybean	cytosol	32.41	33.1
KRH27043	Soybean	cytosol	32.41	33.1
KRH34236	Soybean	cytosol	40.0	32.58
KRG92555	Soybean	cytosol	38.62	31.46

Protein Annotations

EntrezGene:100306004	Gene3D:3.30.70.100	MapMan:35.1	EMBL:ACUP02011524	EnsemblPlantsGene:GLYMA_18G291700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914
GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	UniProt:I1N577	InterPro:IPR006121	EnsemblPlants:KRH01671
ProteinID:KRH01671	ProteinID:KRH01671.1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF47
SUPFAM:SSF55008	UniParc:UPI00023D876F	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:57030553..57032566

Molecular Weight (calculated)

16209.7 Da

IEP (calculated)

10.095

GRAVY (calculated)

-0.388

Length

145 amino acids

Sequence
(BLAST)

001: MGALNYIISN FCTVPSKKIK TMQTVEIKVK MDCDGCERKV RNAVATIKGV KSVEINRKQS RVTVNGCVDP NKVLNRVKRT GKKKAEFWPY VPQHVVTYPH
101: ASGVYDKRAP GGYVRNVQTF AASADTEEKF MSLFSEDNVN ACSIM

Best Arabidopsis Sequence Match ( AT5G17450.1 )
(BLAST)

001: MGAFDYISSF CSYTYANAKT KRKPLQTVDI KVKMDCDGCE RRVRNVVRRM KGVKSVEVNR KQSRITVNGH VDPNKVLKRV KSTGKKAEFW PYIPQHMVYY
101: PFAPGMYDKR APAGHIRNPT QSFPTANAPE ENYVSLFSDD NVHAACSIM

Arabidopsis Description

HIPP21Heavy metal-associated isoprenylated plant protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF57]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.