Factsheet for Solyc03g043640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g085000.2.1
Solyc03g121460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17450.1	Solyc03g121460.1.1	AT3G13710.1	21798944
AT5G17450.1	Solyc02g085000.2.1	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043033	Potato	cytosol	87.76	81.65
Solyc02g091300.2.1	Tomato	cytosol, plastid	72.79	72.3
VIT_14s0006g01800.t01	Wine grape	cytosol	70.75	71.23
KRG93769	Soybean	cytosol	42.18	63.92
CDY16919	Canola	cytosol	64.63	63.76
CDY38431	Canola	cytosol	64.63	63.76
KRH70455	Soybean	cytosol	62.59	63.45
KRH01671	Soybean	cytosol	62.59	63.45
Bra013976.1-P	Field mustard	cytosol	63.95	63.09
AT5G17450.1	Thale cress	cytosol	63.95	63.09
KRG93786	Soybean	cytosol, plastid	41.5	62.89
Bra023619.1-P	Field mustard	cytosol	62.59	61.74
CDY55938	Canola	cytosol	62.59	61.74
CDX85452	Canola	cytosol	62.59	61.74
KRG93169	Soybean	cytosol	59.18	60.42
KRH76245	Soybean	cytosol	36.05	60.23
KRH15973	Soybean	cytosol, plastid	43.54	58.72
Solyc04g007630.1.1	Tomato	cytosol	57.82	57.82
GSMUA_Achr2P07910_001	Banana	cytosol	56.46	54.97
GSMUA_Achr1P12840_001	Banana	cytosol	55.78	54.3
Solyc04g054500.2.1	Tomato	cytosol	55.1	53.29
Solyc05g051820.2.1	Tomato	cytosol	51.02	48.7
Solyc01g111600.2.1	Tomato	nucleus	48.98	47.06
Solyc04g072700.2.1	Tomato	cytosol, plastid	44.9	44.0
Solyc02g083550.1.1	Tomato	cytosol	46.94	43.4
Solyc03g025790.2.1	Tomato	cytosol	30.61	32.37
Solyc02g076880.2.1	Tomato	cytosol	30.61	31.47
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	37.41	30.73
Solyc07g055010.2.1	Tomato	extracellular	29.25	28.48

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	UniProt:K4BFY5	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF110
SUPFAM:SSF55008	EnsemblPlantsGene:Solyc03g043640.2	EnsemblPlants:Solyc03g043640.2.1	UniParc:UPI0002767F88	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:7120471..7123008

Molecular Weight (calculated)

16599.2 Da

IEP (calculated)

10.014

GRAVY (calculated)

-0.413

Length

147 amino acids

Sequence
(BLAST)

001: MGVLEYIASF CTITTSTNNK KKSMQTVEIK VKMDCDGCER RIKNSVKHMK GVKSVEVIRK QSKVIINGYV DPNRVLKKIK STGKRAEFWP YVPYNVVYYP
101: HAPQAYDKRA PAGMVKNVPQ ALLAPNATEE KFAYLFSDDN PSACSIM

Best Arabidopsis Sequence Match ( AT5G17450.1 )
(BLAST)

001: MGAFDYISSF CSYTYANAKT KRKPLQTVDI KVKMDCDGCE RRVRNVVRRM KGVKSVEVNR KQSRITVNGH VDPNKVLKRV KSTGKKAEFW PYIPQHMVYY
101: PFAPGMYDKR APAGHIRNPT QSFPTANAPE ENYVSLFSDD NVHAACSIM

Arabidopsis Description

HIPP21Heavy metal-associated isoprenylated plant protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF57]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.