Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006409 | |
| PGSC0003DMT400009054 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17450.1 | PGSC0003DMT400006409 | AT3G13710.1 | 21798944 |
| AT5G17450.1 | PGSC0003DMT400009054 | AT3G50910.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g043640.2.1 | Tomato | cytosol | 81.65 | 87.76 |
| PGSC0003DMT400078635 | Potato | cytosol, plastid | 62.66 | 66.89 |
| VIT_14s0006g01800.t01 | Wine grape | cytosol | 61.39 | 66.44 |
| CDY16919 | Canola | cytosol | 58.23 | 61.74 |
| CDY38431 | Canola | cytosol | 58.23 | 61.74 |
| Bra013976.1-P | Field mustard | cytosol | 57.59 | 61.07 |
| AT5G17450.1 | Thale cress | cytosol | 57.59 | 61.07 |
| CDY55938 | Canola | cytosol | 56.33 | 59.73 |
| Bra023619.1-P | Field mustard | cytosol | 56.33 | 59.73 |
| CDX85452 | Canola | cytosol | 56.33 | 59.73 |
| KRH01671 | Soybean | cytosol | 53.16 | 57.93 |
| KRH70455 | Soybean | cytosol | 53.16 | 57.93 |
| KRG93769 | Soybean | cytosol | 34.81 | 56.7 |
| KRG93786 | Soybean | cytosol, plastid | 34.18 | 55.67 |
| KRG93169 | Soybean | cytosol | 50.63 | 55.56 |
| PGSC0003DMT400015350 | Potato | cytosol | 51.27 | 55.1 |
| GSMUA_Achr1P12840_001 | Banana | cytosol | 51.9 | 54.3 |
| GSMUA_Achr2P07910_001 | Banana | cytosol | 51.27 | 53.64 |
| KRH15973 | Soybean | cytosol, plastid | 36.71 | 53.21 |
| KRH76245 | Soybean | cytosol | 29.11 | 52.27 |
| PGSC0003DMT400056666 | Potato | cytosol | 46.84 | 48.68 |
| PGSC0003DMT400056199 | Potato | cytosol | 44.3 | 45.45 |
| PGSC0003DMT400015784 | Potato | cytosol | 43.67 | 45.1 |
| PGSC0003DMT400009390 | Potato | cytosol | 43.67 | 43.4 |
| PGSC0003DMT400024479 | Potato | cytosol, plastid | 39.24 | 41.33 |
| PGSC0003DMT400024481 | Potato | cytosol, plastid | 39.24 | 41.33 |
| PGSC0003DMT400079287 | Potato | cytosol | 21.52 | 35.05 |
| PGSC0003DMT400037204 | Potato | cytosol | 28.48 | 32.37 |
| PGSC0003DMT400079324 | Potato | endoplasmic reticulum | 36.08 | 31.67 |
| PGSC0003DMT400012844 | Potato | plastid | 34.81 | 29.89 |
| PGSC0003DMT400026532 | Potato | cytosol | 20.25 | 29.63 |
| PGSC0003DMT400052612 | Potato | cytosol, mitochondrion, nucleus | 18.99 | 26.09 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400043033 | EnsemblPlantsGene:PGSC0003DMG400016689 | EntrezGene:102583175 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF110 | PFAM:PF00403 | PFscan:PS50846 | PGSC:PGSC0003DMG400016689 |
| SEG:seg | SUPFAM:SSF55008 | UniParc:UPI000294D8DF | UniProt:M1BDY7 | MapMan:35.1 | : |
Description
Metal ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016689]
Coordinates
chr3:+:5557033..5561584
Molecular Weight (calculated)
17905.8 Da
IEP (calculated)
10.275
GRAVY (calculated)
-0.437
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLFFLVLST ADKFDGKATN WKGSKVLRKE KALDTSTVEI KVKMDCDGCE RRIKNSVKHM KGVKSVEVIR KQSKVIINGY VDPNRVLKKI KSTGKRAEFW
101: PYVPYNVVYY PHAPQAYDKR APAGMVKNVP QALLAPNATE EKFAYLFSDD NPSACSIM
101: PYVPYNVVYY PHAPQAYDKR APAGMVKNVP QALLAPNATE EKFAYLFSDD NPSACSIM
001: MGAFDYISSF CSYTYANAKT KRKPLQTVDI KVKMDCDGCE RRVRNVVRRM KGVKSVEVNR KQSRITVNGH VDPNKVLKRV KSTGKKAEFW PYIPQHMVYY
101: PFAPGMYDKR APAGHIRNPT QSFPTANAPE ENYVSLFSDD NVHAACSIM
101: PFAPGMYDKR APAGHIRNPT QSFPTANAPE ENYVSLFSDD NVHAACSIM
Arabidopsis Description
HIPP21Heavy metal-associated isoprenylated plant protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.