Factsheet for PGSC0003DMT400009390

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400088401

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66110.1	PGSC0003DMT400088401	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083550.1.1	Tomato	cytosol	96.23	96.23
PGSC0003DMT400015784	Potato	cytosol	69.81	72.55
VIT_04s0023g03910.t01	Wine grape	cytosol	54.72	71.9
Bra009662.1-P	Field mustard	cytosol	52.83	69.42
GSMUA_Achr4P25770_001	Banana	cytosol, plastid	67.3	69.03
GSMUA_Achr1P02370_001	Banana	cytosol, plastid	66.04	67.74
CDY07874	Canola	cytosol	61.01	66.9
VIT_04s0023g03890.t01	Wine grape	cytosol	66.67	66.25
CDX88005	Canola	cytosol	60.38	66.21
AT5G66110.1	Thale cress	cytosol	60.38	65.31
Zm00001d004138_P001	Maize	cytosol	60.38	61.94
TraesCS6D01G049600.1	Wheat	cytosol	61.64	61.64
TraesCS6B01G059000.1	Wheat	cytosol	61.64	61.64
TraesCS6A01G043000.1	Wheat	cytosol	61.64	61.64
TraesCS2B01G077100.1	Wheat	cytosol, plastid	59.75	61.29
TraesCS2D01G063000.1	Wheat	cytosol, plastid	59.75	61.29
EES11880	Sorghum	cytosol	59.12	60.65
Os04t0244800-01	Rice	plasma membrane	59.12	60.65
TraesCS2A01G064900.1	Wheat	nucleus	58.49	60.0
HORVU7Hr1G090970.1	Barley	mitochondrion	57.23	57.23
EES14354	Sorghum	cytosol	53.46	56.29
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	56.6	55.9
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	56.6	55.9
EER92834	Sorghum	cytosol	54.09	55.13
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	55.35	54.66
Zm00001d034978_P001	Maize	cytosol	51.57	54.3
Os03t0156600-01	Rice	cytosol	52.83	54.19
TraesCS5D01G250700.1	Wheat	cytosol	51.57	53.95
TraesCS5A01G244000.1	Wheat	cytosol	51.57	53.95
TraesCS3D01G209500.1	Wheat	cytosol	50.94	53.64
TraesCS3A01G206100.1	Wheat	cytosol	50.94	53.64
Zm00001d052760_P001	Maize	cytosol	50.94	53.64
HORVU5Hr1G069380.2	Barley	cytosol	50.94	53.29
TraesCS5B01G242000.1	Wheat	cytosol	50.94	53.29
Zm00001d027720_P001	Maize	cytosol	52.2	53.21
HORVU3Hr1G049780.1	Barley	cytosol	50.31	52.98
TraesCS2A01G287200.1	Wheat	cytosol	50.31	52.98
TraesCS2B01G304100.1	Wheat	cytosol	50.31	52.98
Os01t0507700-01	Rice	plasma membrane	50.31	52.98
TraesCS2D01G285700.1	Wheat	cytosol	50.31	52.98
PGSC0003DMT400078635	Potato	cytosol, plastid	48.43	52.03
PGSC0003DMT400015350	Potato	cytosol	47.17	51.02
KRH28829	Soybean	cytosol	34.59	45.45
PGSC0003DMT400024481	Potato	cytosol, plastid	42.77	45.33
TraesCS3B01G238100.1	Wheat	cytosol	28.3	45.0
PGSC0003DMT400056666	Potato	cytosol	42.77	44.74
PGSC0003DMT400024479	Potato	cytosol, plastid	42.14	44.67
PGSC0003DMT400056199	Potato	cytosol	42.77	44.16
PGSC0003DMT400043033	Potato	cytosol	43.4	43.67
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	61.01	43.11
PGSC0003DMT400037204	Potato	cytosol	28.93	33.09
PGSC0003DMT400079287	Potato	cytosol	19.5	31.96
PGSC0003DMT400079324	Potato	endoplasmic reticulum	32.7	28.89
PGSC0003DMT400052612	Potato	cytosol, mitochondrion, nucleus	20.13	27.83
PGSC0003DMT400012844	Potato	plastid	32.08	27.72
PGSC0003DMT400026532	Potato	cytosol	16.98	25.0
HORVU2Hr1G011060.1	Barley	nucleus, plastid	23.9	24.52

Protein Annotations

EntrezGene:102600090	Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0030001
GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:M0ZW63	PFAM:PF00403
EnsemblPlantsGene:PGSC0003DMG400003649	PGSC:PGSC0003DMG400003649	EnsemblPlants:PGSC0003DMT400009390	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF14
SUPFAM:SSF55008	UniParc:UPI0002950FB6	RefSeq:XP_006340767.1	:	:	:

Description

Farnesylated protein (ATFP6) [Source:PGSC_GENE;Acc:PGSC0003DMG400003649]

Coordinates

chr2:+:39130570..39131689

Molecular Weight (calculated)

18447.2 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.697

Length

159 amino acids

Sequence
(BLAST)

001: MGFLDHLSEL CEFHRGTSRR KLSKLRRNQL ETVEIRVKMD CEGCERRVRK SVEGMRGVTK VEVEPKKHKL TVIGYVDPDK VLRRVRHRTG KKAEFWPYVP
101: YDLVDHPYVR GVYDKKAPAG YVRNVYDNPQ ASNLARASST EVNYITAFSD ENPQACMVM

Best Arabidopsis Sequence Match ( AT4G38580.2 )
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Arabidopsis Description

HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.