Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G049780.1 | Barley | cytosol | 72.0 | 47.68 |
| TraesCS3A01G206100.1 | Wheat | cytosol | 72.0 | 47.68 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 71.0 | 47.02 |
| TraesCS2B01G304100.1 | Wheat | cytosol | 65.0 | 43.05 |
| Os01t0507700-01 | Rice | plasma membrane | 64.0 | 42.38 |
| Zm00001d052760_P001 | Maize | cytosol | 62.0 | 41.06 |
| EES14354 | Sorghum | cytosol | 62.0 | 41.06 |
| Zm00001d034978_P001 | Maize | cytosol | 61.0 | 40.4 |
| TraesCS5B01G242000.1 | Wheat | cytosol | 59.0 | 38.82 |
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 44.0 | 36.36 |
| Bra009662.1-P | Field mustard | cytosol | 44.0 | 36.36 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 29.0 | 33.72 |
| KRH28829 | Soybean | cytosol | 37.0 | 30.58 |
| CDX88005 | Canola | cytosol | 44.0 | 30.34 |
| CDY07874 | Canola | cytosol | 44.0 | 30.34 |
| TraesCS2B01G077100.1 | Wheat | cytosol, plastid | 46.0 | 29.68 |
| AT5G66110.1 | Thale cress | cytosol | 43.0 | 29.25 |
| TraesCS5B01G191700.1 | Wheat | cytosol | 47.0 | 29.19 |
| TraesCS4B01G105100.1 | Wheat | mitochondrion, plastid | 43.0 | 29.05 |
| TraesCS2B01G186900.1 | Wheat | cytosol | 46.0 | 28.4 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 44.0 | 28.39 |
| Solyc02g083550.1.1 | Tomato | cytosol | 45.0 | 28.3 |
| PGSC0003DMT400009390 | Potato | cytosol | 45.0 | 28.3 |
| KRH29001 | Soybean | cytosol | 44.0 | 28.21 |
| AT4G38580.1 | Thale cress | cytosol | 43.0 | 28.1 |
| Bra010738.1-P | Field mustard | cytosol | 43.0 | 28.1 |
| Bra033570.1-P | Field mustard | cytosol | 43.0 | 28.1 |
| CDX90282 | Canola | cytosol | 43.0 | 28.1 |
| CDY12089 | Canola | cytosol | 43.0 | 28.1 |
| CDY65011 | Canola | cytosol | 43.0 | 28.1 |
| Solyc01g111600.2.1 | Tomato | nucleus | 43.0 | 28.1 |
| PGSC0003DMT400015784 | Potato | cytosol | 43.0 | 28.1 |
| VIT_04s0023g03890.t01 | Wine grape | cytosol | 44.0 | 27.5 |
| CDX72748 | Canola | cytosol | 42.0 | 27.45 |
| KRH60697 | Soybean | cytosol | 42.0 | 27.27 |
| CDX69108 | Canola | cytosol | 41.0 | 26.8 |
| TraesCS6B01G059000.1 | Wheat | cytosol | 42.0 | 26.42 |
| CDY52653 | Canola | cytosol | 40.0 | 26.14 |
| Bra011581.1-P | Field mustard | cytosol | 40.0 | 26.14 |
| TraesCS6B01G332000.2 | Wheat | cytosol | 42.0 | 25.93 |
| AT4G35060.1 | Thale cress | cytosol | 39.0 | 25.49 |
| Bra034669.1-P | Field mustard | cytosol | 37.0 | 24.03 |
| CDX76309 | Canola | cytosol | 37.0 | 24.03 |
| CDY17504 | Canola | cytosol | 37.0 | 24.03 |
| TraesCS7B01G285400.1 | Wheat | mitochondrion, plastid | 37.0 | 22.98 |
| TraesCS6B01G287000.1 | Wheat | mitochondrion | 34.0 | 22.37 |
| TraesCS3B01G329600.1 | Wheat | cytosol | 32.0 | 21.62 |
| TraesCS4B01G348900.1 | Wheat | plastid | 36.0 | 18.46 |
| TraesCS7B01G237800.1 | Wheat | cytosol | 30.0 | 17.65 |
| TraesCS1B01G215100.1 | Wheat | cytosol, plastid | 34.0 | 17.26 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G238100.1 | EnsemblPlantsGene:TraesCS3B01G238100 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF176 | PFAM:PF00403 | PFscan:PS50846 | SEG:seg | SUPFAM:SSF55008 |
| TIGR:cd00371 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:373285222..373285634
Molecular Weight (calculated)
11230.6 Da
IEP (calculated)
11.861
GRAVY (calculated)
-0.736
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MDCEGCERRV KNAVKSIRGV TSVAVNPKMS KVTVTGHVEP RKVLERVKST GKAAEMWPYV PYTLATYPTS AAPTTRRHRR ASSAAHRRPW PTPRRLRSTT
001: MGALNYLSEY FSNHFYVSIR KRKKRKVMQT VNIKVKIDCD GCERKIKNAV SSIKGAKSVE VNRKMHKVTV SGYVDPKKVL KTVQSTGKKK AELWPYVPYT
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM
Arabidopsis Description
HIPP22HIPP22 [Source:UniProtKB/TrEMBL;Acc:A0A178WF89]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.