Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g082910.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38580.1 | Solyc03g082910.2.1 | AT4G27780.1 | 18823312 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015784 | Potato | cytosol | 98.69 | 98.69 |
| AT4G38580.1 | Thale cress | cytosol | 85.62 | 85.62 |
| Bra010738.1-P | Field mustard | cytosol | 84.97 | 84.97 |
| Bra033570.1-P | Field mustard | cytosol | 84.97 | 84.97 |
| CDY65011 | Canola | cytosol | 84.97 | 84.97 |
| CDX90282 | Canola | cytosol | 84.97 | 84.97 |
| CDY12089 | Canola | cytosol | 83.66 | 83.66 |
| CDX72748 | Canola | cytosol | 82.35 | 82.35 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 82.35 | 81.29 |
| KRH60697 | Soybean | cytosol | 79.08 | 78.57 |
| GSMUA_Achr4P25770_001 | Banana | cytosol, plastid | 73.86 | 72.9 |
| KRH29001 | Soybean | cytosol | 73.86 | 72.44 |
| CDY52653 | Canola | cytosol | 69.93 | 69.93 |
| Bra011581.1-P | Field mustard | cytosol | 69.93 | 69.93 |
| CDX69108 | Canola | cytosol | 69.28 | 69.28 |
| AT4G35060.1 | Thale cress | cytosol | 69.28 | 69.28 |
| GSMUA_Achr1P02370_001 | Banana | cytosol, plastid | 69.28 | 68.39 |
| CDX76309 | Canola | cytosol | 67.97 | 67.53 |
| Bra034669.1-P | Field mustard | cytosol | 67.97 | 67.53 |
| Solyc02g083550.1.1 | Tomato | cytosol | 69.93 | 67.3 |
| CDY17504 | Canola | cytosol | 67.32 | 66.88 |
| TraesCS2D01G063000.1 | Wheat | cytosol, plastid | 66.01 | 65.16 |
| TraesCS2B01G077100.1 | Wheat | cytosol, plastid | 66.01 | 65.16 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 35.95 | 63.95 |
| Zm00001d004138_P001 | Maize | cytosol | 64.71 | 63.87 |
| TraesCS2A01G064900.1 | Wheat | nucleus | 64.71 | 63.87 |
| EES11880 | Sorghum | cytosol | 64.71 | 63.87 |
| Os04t0244800-01 | Rice | plasma membrane | 64.05 | 63.23 |
| TraesCS6D01G049600.1 | Wheat | cytosol | 62.09 | 59.75 |
| TraesCS6B01G059000.1 | Wheat | cytosol | 62.09 | 59.75 |
| TraesCS6A01G043000.1 | Wheat | cytosol | 62.09 | 59.75 |
| Os03t0156600-01 | Rice | cytosol | 59.48 | 58.71 |
| Solyc04g007630.1.1 | Tomato | cytosol | 54.9 | 57.14 |
| EER92834 | Sorghum | cytosol | 56.86 | 55.77 |
| Zm00001d027720_P001 | Maize | cytosol | 55.56 | 54.49 |
| Os01t0507700-01 | Rice | plasma membrane | 52.94 | 53.64 |
| Zm00001d034978_P001 | Maize | cytosol | 52.29 | 52.98 |
| EES14354 | Sorghum | cytosol | 52.29 | 52.98 |
| HORVU7Hr1G090970.1 | Barley | mitochondrion | 54.9 | 52.83 |
| TraesCS7A01G382700.1 | Wheat | mitochondrion, plastid | 55.56 | 52.8 |
| TraesCS7B01G285400.1 | Wheat | mitochondrion, plastid | 55.56 | 52.8 |
| TraesCS7D01G379100.1 | Wheat | mitochondrion, plastid | 54.25 | 51.55 |
| Solyc02g091300.2.1 | Tomato | cytosol, plastid | 49.67 | 51.35 |
| Solyc04g054500.2.1 | Tomato | cytosol | 50.98 | 51.32 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 49.67 | 50.33 |
| TraesCS3A01G206100.1 | Wheat | cytosol | 49.67 | 50.33 |
| Zm00001d052760_P001 | Maize | cytosol | 49.67 | 50.33 |
| TraesCS2B01G304100.1 | Wheat | cytosol | 49.67 | 50.33 |
| TraesCS2D01G285700.1 | Wheat | cytosol | 49.67 | 50.33 |
| TraesCS2A01G287200.1 | Wheat | cytosol | 49.67 | 50.33 |
| TraesCS5A01G244000.1 | Wheat | cytosol | 49.67 | 50.0 |
| Solyc04g072700.2.1 | Tomato | cytosol, plastid | 49.02 | 50.0 |
| TraesCS5D01G250700.1 | Wheat | cytosol | 49.67 | 50.0 |
| HORVU3Hr1G049780.1 | Barley | cytosol | 49.02 | 49.67 |
| Solyc05g051820.2.1 | Tomato | cytosol | 49.67 | 49.35 |
| TraesCS5B01G242000.1 | Wheat | cytosol | 49.02 | 49.34 |
| HORVU5Hr1G069380.2 | Barley | cytosol | 49.02 | 49.34 |
| Solyc03g043640.2.1 | Tomato | cytosol | 47.06 | 48.98 |
| TraesCS3B01G238100.1 | Wheat | cytosol | 28.1 | 43.0 |
| HORVU6Hr1G009000.1 | Barley | cytosol, plastid, vacuole | 59.48 | 40.44 |
| Solyc07g055010.2.1 | Tomato | extracellular | 32.68 | 33.11 |
| Solyc03g025790.2.1 | Tomato | cytosol | 29.41 | 32.37 |
| Solyc02g076880.2.1 | Tomato | cytosol | 26.14 | 27.97 |
| Solyc08g075880.2.1 | Tomato | endoplasmic reticulum, plastid | 32.68 | 27.93 |
| HORVU2Hr1G011060.1 | Barley | nucleus, plastid | 28.1 | 27.74 |
Protein Annotations
| Gene3D:3.30.70.100 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010286 | GO:GO:0016020 |
| GO:GO:0019725 | GO:GO:0030001 | GO:GO:0032791 | GO:GO:0046870 | GO:GO:0046872 | GO:GO:0046914 |
| GO:GO:0046916 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | UniProt:K4B422 | PFAM:PF00403 |
| PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF14 | SUPFAM:SSF55008 | EnsemblPlantsGene:Solyc01g111600.2 | EnsemblPlants:Solyc01g111600.2.1 |
| UniParc:UPI000276770F | : | : | : | : | : |
Description
Heavy metal-associated isoprenylated plant protein 26 [Source:Projected from Arabidopsis thaliana (AT4G38580) UniProtKB/Swiss-Prot;Acc:Q9SZN7]
Coordinates
chr1:-:97816722..97819664
Molecular Weight (calculated)
17303.7 Da
IEP (calculated)
9.137
GRAVY (calculated)
-0.595
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVLDHISDM FDCSSEHSKH KRRKQLQTVE IKVKMDCEGC ERKVRRSVEG MKGVSSVTIE PKQHKLTVVG YVDPEKVVSR VAHRTGKKAE IWPYVPYDVV
101: AHPYAQGVYD KKAPAGYVRR DDFQTNQLAR ASSTEVRYTT AFSDENPAAC VVM
101: AHPYAQGVYD KKAPAGYVRR DDFQTNQLAR ASSTEVRYTT AFSDENPAAC VVM
001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
Arabidopsis Description
HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.