Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 3
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g007580.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G18196.1 | Solyc05g007580.1.1 | AT5G15210.1 | 18974936 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079287 | Potato | cytosol | 53.63 | 98.97 |
| PGSC0003DMT400079324 | Potato | endoplasmic reticulum | 97.77 | 97.22 |
| VIT_02s0025g03010.t01 | Wine grape | cytosol, mitochondrion | 64.8 | 81.69 |
| GSMUA_Achr11P... | Banana | cytosol | 52.51 | 71.21 |
| AT2G18196.1 | Thale cress | plastid | 66.48 | 66.85 |
| KRG92555 | Soybean | cytosol | 66.48 | 66.85 |
| KRH34236 | Soybean | cytosol | 65.92 | 66.29 |
| Bra028528.1-P | Field mustard | cytosol | 64.25 | 64.61 |
| CDX67533 | Canola | cytosol | 64.25 | 64.61 |
| CDY13354 | Canola | cytosol | 64.25 | 64.61 |
| CDX86861 | Canola | plastid | 59.78 | 58.79 |
| CDX99542 | Canola | plastid | 59.78 | 58.79 |
| AT4G10465.1 | Thale cress | plastid | 59.78 | 58.47 |
| Bra037919.1-P | Field mustard | plastid | 59.22 | 58.24 |
| Os03t0120400-01 | Rice | plastid | 61.45 | 56.99 |
| GSMUA_Achr11P... | Banana | cytosol | 57.54 | 55.68 |
| EER92967 | Sorghum | plastid | 60.34 | 55.67 |
| CDX85985 | Canola | mitochondrion | 36.31 | 54.17 |
| Zm00001d027405_P001 | Maize | plastid | 58.66 | 54.12 |
| GSMUA_Achr2P10220_001 | Banana | mitochondrion, plastid | 56.98 | 53.4 |
| TraesCS5A01G516900.1 | Wheat | plastid | 58.1 | 53.33 |
| TraesCS4D01G343300.1 | Wheat | plastid | 58.1 | 53.33 |
| TraesCS4B01G348900.1 | Wheat | plastid | 58.1 | 53.33 |
| GSMUA_Achr1P00790_001 | Banana | cytosol | 58.1 | 53.06 |
| Os10t0537400-00 | Rice | cytosol | 48.6 | 47.03 |
| KXG39011 | Sorghum | cytosol | 49.72 | 42.79 |
| TraesCS1B01G215100.1 | Wheat | cytosol, plastid | 44.13 | 40.1 |
| TraesCS1A01G200700.1 | Wheat | cytosol, plastid | 43.58 | 40.0 |
| TraesCS1D01G204100.1 | Wheat | cytosol, plastid | 43.58 | 39.59 |
| Solyc02g091300.2.1 | Tomato | cytosol, plastid | 31.28 | 37.84 |
| Solyc02g076880.2.1 | Tomato | cytosol | 30.17 | 37.76 |
| Solyc03g043640.2.1 | Tomato | cytosol | 30.73 | 37.41 |
| HORVU4Hr1G085090.2 | Barley | plastid | 57.54 | 36.01 |
| Solyc04g007630.1.1 | Tomato | cytosol | 28.49 | 34.69 |
| Solyc03g025790.2.1 | Tomato | cytosol | 26.26 | 33.81 |
| Solyc04g054500.2.1 | Tomato | cytosol | 28.49 | 33.55 |
| Solyc01g111600.2.1 | Tomato | nucleus | 27.93 | 32.68 |
| Solyc02g083550.1.1 | Tomato | cytosol | 28.49 | 32.08 |
| Solyc05g051820.2.1 | Tomato | cytosol | 26.82 | 31.17 |
| Solyc07g055010.2.1 | Tomato | extracellular | 25.7 | 30.46 |
| Solyc04g072700.2.1 | Tomato | cytosol, plastid | 24.58 | 29.33 |
Protein Annotations
| Gene3D:3.30.70.100 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 |
| GO:GO:0030001 | GO:GO:0046872 | GO:GO:0046914 | GO:GO:0046916 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | UniProt:K4CMV5 | PFAM:PF00403 | PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF280 |
| SUPFAM:SSF55008 | EnsemblPlantsGene:Solyc08g075880.2 | EnsemblPlants:Solyc08g075880.2.1 | UniParc:UPI000276BAC5 | : | : |
Description
No Description!
Coordinates
chr8:-:59967149..59968844
Molecular Weight (calculated)
20887.9 Da
IEP (calculated)
9.158
GRAVY (calculated)
-0.559
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNLLEKLFG SFFSAITSFC VFQYHHPHHQ QGTNKHKMTK ARPLSLQTVE LKVRMCCSGC ERVIKDAVYK LRGVESVSVE LEMEKVTVVG YVDRNRVLKA
101: VRRHGKRAEF WPYPNPPLYF TSSNNYFKDM TSEYRDSYNY WRHGYNVADK HGNLHVTHRG DDKVSNLFND DNVNACCLM
101: VRRHGKRAEF WPYPNPPLYF TSSNNYFKDM TSEYRDSYNY WRHGYNVADK HGNLHVTHRG DDKVSNLFND DNVNACCLM
001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM
Arabidopsis Description
HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.