Factsheet for Os03t0120400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0438400-01
Os09t0414600-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18196.1	Os08t0438400-01	AT5G15210.1	18974936
AT2G18196.1	Os09t0414600-02	AT5G15210.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G348900.1	Wheat	plastid	87.05	86.15
TraesCS4D01G343300.1	Wheat	plastid	86.01	85.13
TraesCS5A01G516900.1	Wheat	plastid	86.01	85.13
EER92967	Sorghum	plastid	85.49	85.05
GSMUA_Achr11P...	Banana	cytosol	56.48	82.58
Zm00001d027405_P001	Maize	plastid	81.87	81.44
VIT_02s0025g03010.t01	Wine grape	cytosol, mitochondrion	51.81	70.42
PGSC0003DMT400079287	Potato	cytosol	34.2	68.04
GSMUA_Achr11P...	Banana	cytosol	64.25	67.03
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	66.32	67.02
GSMUA_Achr1P00790_001	Banana	cytosol	67.88	66.84
Solyc08g075880.2.1	Tomato	endoplasmic reticulum, plastid	56.99	61.45
PGSC0003DMT400079324	Potato	endoplasmic reticulum	56.99	61.11
AT2G18196.1	Thale cress	plastid	55.96	60.67
KRH34236	Soybean	cytosol	55.96	60.67
CDY13354	Canola	cytosol	55.96	60.67
CDX67533	Canola	cytosol	55.96	60.67
Bra028528.1-P	Field mustard	cytosol	55.96	60.67
KRG92555	Soybean	cytosol	55.44	60.11
Os10t0537400-00	Rice	cytosol	56.48	58.92
HORVU4Hr1G085090.2	Barley	plastid	85.49	57.69
CDX99542	Canola	plastid	52.85	56.04
CDX86861	Canola	plastid	52.85	56.04
Bra037919.1-P	Field mustard	plastid	52.85	56.04
PGSC0003DMT400012844	Potato	plastid	52.85	55.43
AT4G10465.1	Thale cress	plastid	51.3	54.1
CDX85985	Canola	mitochondrion	33.16	53.33
Os01t0507700-01	Rice	plasma membrane	29.02	37.09
Os03t0383900-01	Rice	cytosol	29.53	36.31
Os08t0403300-00	Rice	cytosol	27.46	35.33
Os04t0244800-01	Rice	plasma membrane	27.46	34.19
Os03t0156600-01	Rice	cytosol	26.42	32.9
Os09t0364800-01	Rice	cytosol, nucleus	18.65	32.14
Os01t0758000-00	Rice	cytosol	23.32	29.41
Os06t0542300-01	Rice	cytosol	23.32	24.59

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EntrezGene:4331432	ProteinID:AAM52313.1	ProteinID:AAO15298.1	ProteinID:ABF93694.1
EMBL:AK070517	ProteinID:BAF10702.1	ProteinID:BAS82024.1	ProteinID:EAZ25388.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916
InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	EnsemblPlantsGene:Os03g0120400	EnsemblPlants:Os03t0120400-01	PFAM:PF00403
PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF141	UniProt:Q8LMS1	SUPFAM:SSF55008	UniParc:UPI00000AC1DC
RefSeq:XP_015628826.1	SEG:seg	:	:	:	:

Description

Heavy metal transport/detoxification protein domain containing protein. (Os03t0120400-01)

Coordinates

chr3:-:1124982..1127056

Molecular Weight (calculated)

21975.9 Da

IEP (calculated)

8.353

GRAVY (calculated)

-0.648

Length

193 amino acids

Sequence
(BLAST)

001: MSTVSSALSS FLYCCFSPTG GHRHGHRAGA YYYSSHPTST NTYYYEGGLA GRRMGRSRPL SLQTVELKVR MCCSGCERVV KHALMKLRGV DSVEVELEME
101: KVTVTGYVER QRVLKEVRRA GKKAEFWPNP DLPLYFTSAK DYFHDEESFR PSYNYYRHGY NGDKHGHLPE PHRGADPVSN LFNDDDVNAC SIM

Best Arabidopsis Sequence Match ( AT2G18196.1 )
(BLAST)

001: MGFGSFISTI TYCLFFRYPH KKPKFKSVSH LNHYHTMPMA RPLSLQTIDL KVRMCCSGCE RVVKHAIYKL RGVDSVEVNL EMERVTVVGY VERKKVLKAV
101: RRAGKRAEFW PYPDMPRYFT SSDHYFKDTT REFRESYNYY RHGYNLSDRH GNIHVTNRGD DKMSNFFNDD NVHACSLM

Arabidopsis Description

HIPP30Heavy metal-associated isoprenylated plant protein 30 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.