CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08190
KRH10001
KRH23330
KRH28715
KRH44167
KRH47141
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17450.1	KRH10001	AT3G13710.1	21798944
AT5G17450.1	KRH23330	AT3G13710.1	21798944
AT5G17450.1	KRH44167	AT3G13710.1	21798944
AT5G17450.1	KRH47141	AT3G13710.1	21798944
AT5G17450.1	KRH08190	AT3G50910.1	21798944
AT5G17450.1	KRH28715	AT3G50910.1	21798944
AT5G17450.1	KRH69884	AT3G50910.1	21798944
AT5G17450.1	KRH76747	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01671	Soybean	cytosol	96.55	96.55
KRG93769	Soybean	cytosol	48.28	72.16
KRG93786	Soybean	cytosol, plastid	46.9	70.1
KRH76245	Soybean	cytosol	42.07	69.32
KRG93169	Soybean	cytosol	67.59	68.06
VIT_14s0006g01800.t01	Wine grape	cytosol	68.28	67.81
AT5G17450.1	Thale cress	cytosol	66.21	64.43
KRH15973	Soybean	cytosol, plastid	48.28	64.22
Bra013976.1-P	Field mustard	cytosol	65.52	63.76
Bra023619.1-P	Field mustard	cytosol	64.83	63.09
CDX85452	Canola	cytosol	64.83	63.09
CDY55938	Canola	cytosol	64.83	63.09
CDY38431	Canola	cytosol	64.83	63.09
Solyc03g043640.2.1	Tomato	cytosol	63.45	62.59
CDY16919	Canola	cytosol	64.14	62.42
KRH35768	Soybean	cytosol, plastid	60.0	59.59
KRG90986	Soybean	cytosol, plastid	60.0	59.59
Solyc02g091300.2.1	Tomato	cytosol, plastid	60.0	58.78
PGSC0003DMT400078635	Potato	cytosol, plastid	60.0	58.78
KRH38224	Soybean	cytosol	59.31	58.5
GSMUA_Achr2P07910_001	Banana	cytosol	55.86	53.64
PGSC0003DMT400043033	Potato	cytosol	57.93	53.16
GSMUA_Achr1P12840_001	Banana	cytosol	53.79	51.66
KRH59402	Soybean	cytosol	54.48	51.63
KRH43240	Soybean	cytosol	54.48	51.63
KRH29001	Soybean	cytosol	53.1	49.36
KRH60697	Soybean	cytosol	51.72	48.7
KRH24318	Soybean	cytosol, nucleus, plastid	28.28	47.67
KRH31264	Soybean	cytosol	48.97	45.81
KRH38229	Soybean	cytosol	45.52	44.9
KRG97609	Soybean	cytosol	48.28	44.59
KRH62410	Soybean	cytosol, plastid	43.45	42.28
KRH53129	Soybean	cytosol	42.07	40.94
KRH28829	Soybean	cytosol	31.72	38.02
KRH58951	Soybean	cytosol	35.86	37.14
KRH09015	Soybean	cytosol	32.41	34.06
KRH38480	Soybean	cytosol	27.59	33.61
KRH22286	Soybean	cytosol	32.41	33.1
KRH27043	Soybean	cytosol	32.41	33.1
KRH34236	Soybean	cytosol	40.0	32.58
KRH57823	Soybean	cytosol	33.1	32.43
KRG92555	Soybean	cytosol	38.62	31.46

Protein Annotations

EntrezGene:100779672	Gene3D:3.30.70.100	MapMan:35.1	EMBL:ACUP02000774	EnsemblPlantsGene:GLYMA_02G091400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914
GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	UniProt:I1JDN3	InterPro:IPR006121	EnsemblPlants:KRH70455
ProteinID:KRH70455	ProteinID:KRH70455.1	ProteinID:KRH70456.1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF47	SUPFAM:SSF55008	UniParc:UPI000233743E	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:8081604..8083586

Molecular Weight (calculated)

16281.7 Da

IEP (calculated)

10.115

GRAVY (calculated)

-0.408

Length

145 amino acids

Sequence
(BLAST)

001: MGALNYIISN FCTVPSKKIK TMQTVEIKVK MDCDGCERKV RNAVATIKGV KSVEINRKQS RVTVNGCVDP NKVLNRVKRT GKKRAEFWPY VAQHVVTYPH
101: ASGIYDKRAP GGYVRNVQTF TPSADTEEKF MSLFSEDNVN ACSIM

Best Arabidopsis Sequence Match ( AT1G22990.1 )
(BLAST)

001: MGALNYLSEY FSNHFYVSIR KRKKRKVMQT VNIKVKIDCD GCERKIKNAV SSIKGAKSVE VNRKMHKVTV SGYVDPKKVL KTVQSTGKKK AELWPYVPYT
101: MVAYPYAAGA YDKRAPPGFV RKSEQAQAQP GSTDDKLMSL FSDENPNACT VM

Arabidopsis Description

HIPP22HIPP22 [Source:UniProtKB/TrEMBL;Acc:A0A178WF89]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.