Factsheet for Bra011840.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39700.1	Bra004399.1-P	AT1G69600.1	18974936
AT4G39700.1	Bra007869.1-P	AT1G69600.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41999	Canola	cytosol	100.0	100.0
CDY42647	Canola	cytosol	99.37	99.37
CDX86196	Canola	cytosol	99.37	99.37
AT4G39700.1	Thale cress	cytosol	94.3	94.3
PGSC0003DMT400056666	Potato	cytosol	75.95	78.95
Solyc04g054500.2.1	Tomato	cytosol	75.95	78.95
KRH43240	Soybean	cytosol	75.32	77.78
KRH59402	Soybean	cytosol	75.32	77.78
KRH31264	Soybean	cytosol	74.05	75.48
VIT_07s0031g01160.t01	Wine grape	cytosol	70.89	74.17
PGSC0003DMT400056199	Potato	cytosol	71.52	73.38
KRG97609	Soybean	cytosol	71.52	71.97
Solyc05g051820.2.1	Tomato	cytosol	68.99	70.78
GSMUA_Achr4P01830_001	Banana	cytosol	66.46	70.47
HORVU5Hr1G057730.1	Barley	cytosol	69.62	68.32
TraesCS5D01G199500.1	Wheat	cytosol	68.99	68.12
TraesCS5B01G191700.1	Wheat	cytosol	68.99	67.7
TraesCS5A01G191400.1	Wheat	cytosol	68.35	67.5
GSMUA_Achr3P04460_001	Banana	cytosol	62.66	66.44
EER96651	Sorghum	cytosol	66.46	65.22
GSMUA_Achr3P07890_001	Banana	cytosol, mitochondrion, plastid	60.76	64.43
EER99736	Sorghum	cytosol	67.72	63.69
Zm00001d020257_P001	Maize	cytosol	65.19	63.58
TraesCS2A01G160700.1	Wheat	cytosol	64.56	62.96
TraesCS2B01G186900.1	Wheat	cytosol	64.56	62.96
TraesCS2D01G168000.1	Wheat	cytosol	64.56	62.96
Bra037865.1-P	Field mustard	cytosol	59.49	62.67
GSMUA_Achr10P...	Banana	cytosol	57.59	62.33
Os03t0383900-01	Rice	cytosol	60.13	60.51
Zm00001d005656_P001	Maize	mitochondrion	60.76	59.63
GSMUA_Achr7P11680_001	Banana	cytosol	55.7	59.06
Os08t0403300-00	Rice	cytosol	55.06	58.0
Bra024556.1-P	Field mustard	cytosol	51.9	55.78
Bra016162.1-P	Field mustard	cytosol	52.53	55.33
Zm00001d032291_P001	Maize	cytosol	48.73	53.47
Bra012353.1-P	Field mustard	cytosol	51.27	53.29
EES13808	Sorghum	cytosol	48.73	53.1
TraesCS4B01G105100.1	Wheat	mitochondrion, plastid	49.37	52.7
TraesCS4A01G211400.1	Wheat	mitochondrion, plastid	48.73	52.03
TraesCS4D01G102000.1	Wheat	mitochondrion, plastid	48.73	52.03
Os09t0364800-01	Rice	cytosol, nucleus	35.44	50.0
Bra009662.1-P	Field mustard	cytosol	37.97	49.59
Bra033570.1-P	Field mustard	cytosol	46.84	48.37
Bra010738.1-P	Field mustard	cytosol	46.84	48.37
Bra023619.1-P	Field mustard	cytosol	43.67	46.31
Bra013976.1-P	Field mustard	cytosol	43.67	46.31
HORVU4Hr1G017070.3	Barley	cytosol	48.73	45.29
Bra011581.1-P	Field mustard	cytosol	40.51	41.83
Bra034669.1-P	Field mustard	cytosol	40.51	41.56
Bra018022.1-P	Field mustard	cytosol	34.18	39.13
Bra007280.1-P	Field mustard	cytosol	34.18	34.18
Bra014664.1-P	Field mustard	cytosol	29.11	34.07
Bra030119.1-P	Field mustard	cytosol	30.38	34.04
Bra032428.1-P	Field mustard	cytosol	33.54	33.97
Bra028528.1-P	Field mustard	cytosol	33.54	29.78
Bra037919.1-P	Field mustard	plastid	34.18	29.67

Protein Annotations

EnsemblPlants:Bra011840.1	EnsemblPlants:Bra011840.1-P	EnsemblPlantsGene:Bra011840	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF171	PFAM:PF00403	PFscan:PS50846	SUPFAM:SSF55008
UniParc:UPI000254605F	UniProt:M4D5T3	MapMan:35.1	:	:	:

Description

AT4G39700 (E=2e-084) | heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related

Coordinates

chrA01:+:277116..277867

Molecular Weight (calculated)

17381.0 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.515

Length

158 amino acids

Sequence
(BLAST)

001: MGVGGTLEYI SELIGSGGSH SYGKRKKKKQ FQTVELKVRM DCDGCVLKVK NSLSSLKGVK SVEINKKQQK VTVSGYAEAS KVLKKAKSTG KKAEIWPYVP
101: YNLVAQPYIA QAYDKKAPPG YVRKMDPYVT TGTMAVYNDD PSYTSMFSDD NPNACSIM

Best Arabidopsis Sequence Match ( AT4G39700.1 )
(BLAST)

001: MGVGGTLEYI SELIGNGGSH SYGKRKKKKQ FQTVELKVRM DCDGCVLKIK NSLSSLKGVK TVEINKKQQK VTVSGYADAS KVLKKAKATG KKAEIWPYVP
101: YNLVAQPYIA QAYDKKAPPG YVRKVDPNVT TGTMAVYYDD PSYTSLFSDD NPNACSIM

Arabidopsis Description

HIPP23Heavy metal-associated isoprenylated plant protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O65657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.