Factsheet for Bra016162.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra006747.1-P
Bra007869.1-P
Bra020357.1-P
Bra029936.1-P
Bra031642.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71050.1	Bra031642.1-P	AT1G08830.1	21798944
AT1G71050.1	Bra004399.1-P	AT1G69600.1	18974936
AT1G71050.1	Bra007869.1-P	AT1G69600.1	18974936
AT1G71050.1	Bra029936.1-P	AT3G49160.1	21798944
AT1G71050.1	Bra006747.1-P	AT5G58720.1	21798944
AT1G71050.1	Bra020357.1-P	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96299	Canola	cytosol	100.0	100.0
CDX72773	Canola	cytosol	100.0	100.0
AT1G71050.1	Thale cress	cytosol, nucleus, plastid	89.33	88.16
Bra012353.1-P	Field mustard	cytosol	76.0	75.0
Bra024556.1-P	Field mustard	cytosol	72.67	74.15
Bra010738.1-P	Field mustard	cytosol	56.67	55.56
Bra013976.1-P	Field mustard	cytosol	54.67	55.03
Bra023619.1-P	Field mustard	cytosol	54.0	54.36
Bra033570.1-P	Field mustard	cytosol	55.33	54.25
Bra009662.1-P	Field mustard	cytosol	43.33	53.72
Bra011840.1-P	Field mustard	cytosol	55.33	52.53
Bra011581.1-P	Field mustard	cytosol	48.67	47.71
Bra034669.1-P	Field mustard	cytosol	48.0	46.75
Bra037865.1-P	Field mustard	cytosol	44.67	44.67
Bra018022.1-P	Field mustard	cytosol	36.0	39.13
Bra014664.1-P	Field mustard	cytosol	32.0	35.56
Bra007280.1-P	Field mustard	cytosol	36.0	34.18
Bra032428.1-P	Field mustard	cytosol	34.0	32.69
Bra030119.1-P	Field mustard	cytosol	30.0	31.91
Bra028528.1-P	Field mustard	cytosol	36.0	30.34
Bra037919.1-P	Field mustard	plastid	36.67	30.22

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EnsemblPlantsGene:Bra016162	EnsemblPlants:Bra016162.1	EnsemblPlants:Bra016162.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872
GO:GO:0055073	GO:GO:0071585	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:M4DI35
PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF176	SUPFAM:SSF55008	UniParc:UPI0002541332
SEG:seg	:	:	:	:	:

Description

AT1G71050 (E=4e-056) | heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related

Coordinates

chrA07:-:19111917..19112635

Molecular Weight (calculated)

17006.7 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.569

Length

150 amino acids

Sequence
(BLAST)

001: MGALDSLSEY ISDYFHVSRK RRKRKVKQTV NIKVKMDCDG CERRVKNAVS SMKGVETVEL NRKIHKVTVS GYVEPKKVLK RVERTGKKAE MWPYVPYNVV
101: AYPYAVGVYD KKAPAGYVRK SEQSQPLPGA PDDVIMSLFS DENPNACTVM

Best Arabidopsis Sequence Match ( AT1G71050.1 )
(BLAST)

001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM

Arabidopsis Description

HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.