Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016162.1-P | Field mustard | cytosol | 88.16 | 89.33 |
| CDX72773 | Canola | cytosol | 88.16 | 89.33 |
| CDX96299 | Canola | cytosol | 88.16 | 89.33 |
| AT1G22990.1 | Thale cress | cytosol | 75.0 | 75.0 |
| AT5G17450.1 | Thale cress | cytosol | 58.55 | 59.73 |
| AT4G38580.1 | Thale cress | cytosol | 55.26 | 54.9 |
| AT5G66110.1 | Thale cress | cytosol | 50.66 | 52.38 |
| AT4G39700.1 | Thale cress | cytosol | 53.95 | 51.9 |
| AT4G35060.1 | Thale cress | cytosol | 47.37 | 47.06 |
| AT4G08570.1 | Thale cress | cytosol | 45.39 | 46.0 |
| AT3G48970.1 | Thale cress | cytosol | 34.21 | 37.14 |
| AT1G06330.1 | Thale cress | cytosol | 34.87 | 35.33 |
| AT3G56891.1 | Thale cress | cytosol | 34.87 | 31.93 |
| AT1G29100.2 | Thale cress | cytosol | 28.95 | 29.93 |
| AT4G10465.1 | Thale cress | plastid | 34.87 | 28.96 |
| AT2G18196.1 | Thale cress | plastid | 33.55 | 28.65 |
Protein Annotations
| Gene3D:3.30.70.100 | MapMan:35.1 | EntrezGene:843445 | UniProt:A0A178W5Y0 | ProteinID:AAG51694.1 | ProteinID:AEE35156.1 |
| EMBL:AK117880 | ArrayExpress:AT1G71050 | EnsemblPlantsGene:AT1G71050 | RefSeq:AT1G71050 | TAIR:AT1G71050 | RefSeq:AT1G71050-TAIR-G |
| EnsemblPlants:AT1G71050.1 | TAIR:AT1G71050.1 | EMBL:AY087875 | Unigene:At.74076 | EMBL:BT003666 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019725 | GO:GO:0030001 |
| GO:GO:0046872 | GO:GO:0046914 | GO:GO:0046916 | GO:GO:0055073 | GO:GO:0071585 | Symbol:HIPP20 |
| InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | RefSeq:NP_177261.1 | ProteinID:OAP12895.1 | PFAM:PF00403 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF176 |
| UniProt:Q9C9A3 | SUPFAM:SSF55008 | UniParc:UPI000000C0F0 | SEG:seg | : | : |
Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
Coordinates
chr1:-:26803097..26804292
Molecular Weight (calculated)
17384.2 Da
IEP (calculated)
10.265
GRAVY (calculated)
-0.593
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.