CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68515
CDX71154
CDX83068
CDX93533
CDX95028
CDX95914
CDY01760
CDY02832
CDY06331
CDY22663
CDY28566
CDY32688
CDY44079
CDY61025
CDY69935

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71050.1	CDX93533	AT1G08830.1	21798944
AT1G71050.1	CDX95028	AT1G08830.1	21798944
AT1G71050.1	CDY06331	AT1G08830.1	21798944
AT1G71050.1	CDY22663	AT1G08830.1	21798944
AT1G71050.1	CDX95914	AT1G69600.1	18974936
AT1G71050.1	CDY01760	AT1G69600.1	18974936
AT1G71050.1	CDY28566	AT1G69600.1	18974936
AT1G71050.1	CDY44079	AT1G69600.1	18974936
AT1G71050.1	CDX68515	AT3G49160.1	21798944
AT1G71050.1	CDX83068	AT3G49160.1	21798944
AT1G71050.1	CDY69935	AT3G49160.1	21798944
AT1G71050.1	CDX71154	AT5G58720.1	21798944
AT1G71050.1	CDY02832	AT5G58720.1	21798944
AT1G71050.1	CDY32688	AT5G58720.1	21798944
AT1G71050.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016162.1-P	Field mustard	cytosol	100.0	100.0
CDX96299	Canola	cytosol	100.0	100.0
AT1G71050.1	Thale cress	cytosol, nucleus, plastid	89.33	88.16
CDY12499	Canola	cytosol	76.67	75.16
CDY25762	Canola	cytosol	76.0	74.51
CDY21408	Canola	cytosol	76.0	74.51
CDY04750	Canola	cytosol	75.33	73.86
CDY38431	Canola	cytosol	55.33	55.7
CDX90282	Canola	cytosol	56.67	55.56
CDY16919	Canola	cytosol	54.67	55.03
CDY12089	Canola	cytosol	56.0	54.9
CDY55938	Canola	cytosol	54.0	54.36
CDX85452	Canola	cytosol	54.0	54.36
CDY65011	Canola	cytosol	55.33	54.25
CDX72748	Canola	cytosol	54.0	52.94
CDY41999	Canola	cytosol	55.33	52.53
CDY42647	Canola	cytosol	55.33	52.53
CDX86196	Canola	cytosol	55.33	52.53
CDX88005	Canola	cytosol	48.67	50.34
CDY07874	Canola	cytosol	48.67	50.34
CDX75144	Canola	cytosol	40.67	48.41
CDY52653	Canola	cytosol	48.67	47.71
CDX69108	Canola	cytosol	48.0	47.06
CDX76309	Canola	cytosol	48.0	46.75
CDY17504	Canola	cytosol	47.33	46.1
CDY36193	Canola	cytosol	44.67	44.67
CDY05886	Canola	cytosol	36.0	39.13
CDY08096	Canola	cytosol	36.0	39.13
CDY27183	Canola	cytosol	36.67	34.81
CDX72102	Canola	cytosol	36.0	34.18
CDX76017	Canola	cytosol	35.33	33.54
CDY06206	Canola	cytosol	33.33	33.11
CDY47384	Canola	cytosol, extracellular	34.67	32.7
CDY57455	Canola	cytosol	30.0	31.91
CDX94648	Canola	cytosol	30.0	31.91
CDY13354	Canola	cytosol	36.0	30.34
CDX67533	Canola	cytosol	36.0	30.34
CDX99542	Canola	plastid	36.67	30.22
CDX86861	Canola	plastid	36.67	30.22
CDX85985	Canola	mitochondrion	19.33	24.17
CDY09978	Canola	cytosol	35.33	18.15

Protein Annotations

EnsemblPlants:CDX72773	EnsemblPlantsGene:GSBRNA2T00103152001	Gene3D:3.30.70.100	GO:A0A078E6J7	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF176	PFAM:PF00403	PFscan:PS50846	ProteinID:CDX72773
ProteinID:CDX72773.1	SEG:seg	SUPFAM:SSF55008	UniParc:UPI0002541332	MapMan:35.1	:

Description

BnaC06g32210D

Coordinates

chrLK031797:-:169889..170672

Molecular Weight (calculated)

17006.7 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.569

Length

150 amino acids

Sequence
(BLAST)

001: MGALDSLSEY ISDYFHVSRK RRKRKVKQTV NIKVKMDCDG CERRVKNAVS SMKGVETVEL NRKIHKVTVS GYVEPKKVLK RVERTGKKAE MWPYVPYNVV
101: AYPYAVGVYD KKAPAGYVRK SEQSQPLPGA PDDVIMSLFS DENPNACTVM

Best Arabidopsis Sequence Match ( AT1G71050.1 )
(BLAST)

001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM

Arabidopsis Description

HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.