CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93533	Canola	cytosol	99.34	99.34
AT1G08830.1	Thale cress	cytosol	95.39	95.39
CDY06331	Canola	cytosol	93.42	93.42
VIT_14s0030g00950.t01	Wine grape	cytosol	79.61	83.45
Solyc01g067740.2.1	Tomato	extracellular	82.89	82.89
OQU92597	Sorghum	cytosol	82.89	82.89
PGSC0003DMT400027651	Potato	cytosol	82.24	82.24
KRG96907	Soybean	extracellular, plasma membrane	81.58	81.58
KRH68647	Soybean	extracellular	81.58	81.58
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	79.61	79.61
VIT_14s0030g00830.t01	Wine grape	cytosol	78.95	79.47
Os03t0351500-01	Rice	extracellular	78.95	78.95
TraesCS2A01G121200.1	Wheat	golgi, unclear	79.61	77.07
KXG36882	Sorghum	cytosol	80.92	74.1
CDY22663	Canola	plastid	90.79	72.63
HORVU5Hr1G066230.1	Barley	cytosol	65.13	68.75
HORVU5Hr1G066930.1	Barley	cytosol	64.47	68.06
VIT_14s0036g01320.t01	Wine grape	cytosol	34.87	67.09
Zm00001d047479_P002	Maize	cytosol	70.39	57.22
CDY25459	Canola	cytosol	59.87	55.83
CDY38486	Canola	cytosol	58.55	54.94
HORVU2Hr1G021110.3	Barley	plastid	51.97	49.38
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	47.37	48.65
Zm00001d029170_P004	Maize	cytosol	71.05	46.55
CDX77163	Canola	plastid	61.18	45.81
CDY30502	Canola	plastid	61.84	45.19
Zm00001d022505_P002	Maize	cytosol	76.32	44.96

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:A0A078E6R4	EnsemblPlants:CDX95028	ProteinID:CDX95028	ProteinID:CDX95028.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00100545001
InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003
PANTHER:PTHR10003:SF34	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI0004EB5455	:	:	:	:

Description

BnaC05g06430D

Coordinates

chrLK031886:-:772602..774938

Molecular Weight (calculated)

15136.7 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.096

Length

152 amino acids

Sequence
(BLAST)

001: MGKGVAVLNS SEGVKGTIFF TQEGDGVTSV TGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKQH GAPEDANRHA GDLGNIIVGD DGTATFTITD
101: CQIPLSGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.