CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06331	Canola	cytosol	73.68	92.11
CDX93533	Canola	cytosol	73.16	91.45
CDX95028	Canola	cytosol	72.63	90.79
AT1G08830.1	Thale cress	cytosol	72.11	90.13
VIT_14s0030g00950.t01	Wine grape	cytosol	61.58	80.69
OQU92597	Sorghum	cytosol	64.21	80.26
VIT_14s0030g00830.t01	Wine grape	cytosol	63.68	80.13
Solyc01g067740.2.1	Tomato	extracellular	63.16	78.95
KRG96907	Soybean	extracellular, plasma membrane	63.16	78.95
KRH68647	Soybean	extracellular	62.63	78.29
PGSC0003DMT400027651	Potato	cytosol	62.63	78.29
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	60.53	75.66
Os03t0351500-01	Rice	extracellular	60.53	75.66
TraesCS2A01G121200.1	Wheat	golgi, unclear	61.58	74.52
KXG36882	Sorghum	cytosol	62.11	71.08
HORVU5Hr1G066230.1	Barley	cytosol	51.05	67.36
VIT_14s0036g01320.t01	Wine grape	cytosol	27.89	67.09
HORVU5Hr1G066930.1	Barley	cytosol	50.53	66.67
Zm00001d047479_P002	Maize	cytosol	54.74	55.62
CDY25459	Canola	cytosol	45.79	53.37
HORVU2Hr1G021110.3	Barley	plastid	44.74	53.12
CDY38486	Canola	cytosol	44.74	52.47
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	37.37	47.97
CDX77163	Canola	plastid	49.47	46.31
CDY30502	Canola	plastid	50.0	45.67
Zm00001d022505_P002	Maize	cytosol	61.58	45.35
Zm00001d029170_P004	Maize	cytosol	55.26	45.26

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:A0A078GDE6	UniProt:A0A078GDE6	EnsemblPlants:CDY22663	ProteinID:CDY22663
ProteinID:CDY22663.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00019333001	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI0004EDC0A9	SEG:seg	:	:

Description

BnaC08g42970DBnaC08g42970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDE6]

Coordinates

chrLK032134:-:356571..358767

Molecular Weight (calculated)

19531.8 Da

IEP (calculated)

6.915

GRAVY (calculated)

-0.321

Length

190 amino acids

Sequence
(BLAST)

001: MSTSRAYIQQ PQSSFSPQII HFQGISSYSL PKGYPEITKD HKTMAKGVAV LNSSEGVKGT IFFTHEGNGA TTVTGTVSGL KPGLHGFHVH ALGDTTNGCM
101: STGPHFNPDG KTHGAPEDAN RHAGDLGNII VGDDGTATFT ITDSQIPLSG PNSIVGRAVV VHADPDDLGK GGHELSLSTG NAGGRVACGK

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.