Factsheet for TraesCS2D01G123300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, unclear
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

extracellular: 19786127
golgi: 23128297
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G121200.1	Wheat	golgi, unclear	97.37	94.27
HORVU5Hr1G066230.1	Barley	cytosol	81.58	86.11
HORVU5Hr1G066930.1	Barley	cytosol	80.92	85.42
VIT_14s0030g00950.t01	Wine grape	cytosol	78.29	82.07
GSMUA_Achr2P02380_001	Banana	cytosol	80.92	80.92
AT1G08830.1	Thale cress	cytosol	80.26	80.26
CDX93533	Canola	cytosol	80.26	80.26
Bra031642.1-P	Field mustard	cytosol	79.61	79.61
KRG96907	Soybean	extracellular, plasma membrane	79.61	79.61
CDY06331	Canola	cytosol	79.61	79.61
CDX95028	Canola	cytosol	79.61	79.61
Solyc01g067740.2.1	Tomato	extracellular	78.95	78.95
GSMUA_Achr7P03680_001	Banana	plasma membrane	78.29	78.29
PGSC0003DMT400027651	Potato	cytosol	78.29	78.29
KRH68647	Soybean	extracellular	77.63	77.63
VIT_14s0030g00830.t01	Wine grape	cytosol	76.32	76.82
KXG36882	Sorghum	cytosol	83.55	76.51
VIT_14s0036g01320.t01	Wine grape	cytosol	31.58	60.76
CDY22663	Canola	plastid	75.66	60.53
HORVU2Hr1G021110.3	Barley	plastid	63.16	60.0
TraesCS4D01G242800.2	Wheat	cytosol	59.21	54.88
TraesCS7D01G290700.2	Wheat	plastid	66.45	50.0
Zm00001d022505_P002	Maize	cytosol	80.92	47.67

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	EnsemblPlantsGene:TraesCS2D01G123300	EnsemblPlants:TraesCS2D01G123300.1	TIGR:cd00305	:	:

Description

No Description!

Coordinates

chr2D:+:72170395..72172436

Molecular Weight (calculated)

15092.7 Da

IEP (calculated)

6.150

GRAVY (calculated)

-0.028

Length

152 amino acids

Sequence
(BLAST)

001: MVKAVAVLTG SEGVKGTIFF TQEGDGPTTV TGSVTGLKEG LHGFHVHALG DTTNGCMSTG PHFNPAGHVH GAPEDEIRHA GDLGNVTAGA DGVANINVTD
101: CHIPLTGPNS IVGRAVVVHG DADDLGKGGH ELSKSTGNAG ARVACGIIGL QG

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.