Factsheet for GSMUA_Achr7P03680_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P02380_001	Banana	cytosol	88.16	88.16
OQU92597	Sorghum	cytosol	85.53	85.53
Os03t0351500-01	Rice	extracellular	84.87	84.87
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	78.29	78.29
KXG36882	Sorghum	cytosol	84.87	77.71
TraesCS2A01G121200.1	Wheat	golgi, unclear	78.29	75.8
HORVU5Hr1G066230.1	Barley	cytosol	63.82	67.36
HORVU5Hr1G066930.1	Barley	cytosol	63.16	66.67
Zm00001d047479_P002	Maize	cytosol	71.71	58.29
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	61.18	58.12
HORVU2Hr1G021110.3	Barley	plastid	52.63	50.0
Zm00001d022505_P002	Maize	cytosol	82.89	48.84
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	46.71	47.97
Zm00001d029170_P004	Maize	cytosol	73.03	47.84
GSMUA_Achr10P...	Banana	plastid	63.16	44.44
GSMUA_Achr9P20410_001	Banana	plastid	62.5	41.48

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr7G03680_001	EnsemblPlants:GSMUA_Achr7P03680_001	EnsemblPlants:GSMUA_Achr7T03680_001
InterPro:IPR036423	UniProt:M0TEF8	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI00029521E7	:	:	:	:

Description

Superoxide dismutase [Cu-Zn] [Source:GMGC_GENE;Acc:GSMUA_Achr7G03680_001]

Coordinates

chr7:-:2916220..2918774

Molecular Weight (calculated)

15038.5 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.151

Length

152 amino acids

Sequence
(BLAST)

001: MAKAVAVLGS SDSVKGTVYF AQEGDGPTTV TGTISGLKPG LHGFHVHALG DTTNGCMSTG PHFNPAGKEH GAPDDAGRHA GDLGNVTAGE DGTVTFSITD
101: SQIPLSGPNS IIGRAVVVHA DPDDLGKGGH ELSKTTGNAG GRVACGIIGL QA

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.