Factsheet for TraesCS2A01G121200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	peroxisome

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	94.27	97.37
HORVU5Hr1G066230.1	Barley	cytosol	76.43	83.33
HORVU5Hr1G066930.1	Barley	cytosol	75.8	82.64
VIT_14s0030g00950.t01	Wine grape	cytosol	75.16	81.38
KRG96907	Soybean	extracellular, plasma membrane	78.34	80.92
AT1G08830.1	Thale cress	cytosol	77.71	80.26
CDX93533	Canola	cytosol	77.71	80.26
GSMUA_Achr2P02380_001	Banana	cytosol	77.71	80.26
Bra031642.1-P	Field mustard	cytosol	77.07	79.61
Solyc01g067740.2.1	Tomato	extracellular	77.07	79.61
CDY06331	Canola	cytosol	77.07	79.61
CDX95028	Canola	cytosol	77.07	79.61
KRH68647	Soybean	extracellular	76.43	78.95
PGSC0003DMT400027651	Potato	cytosol	76.43	78.95
GSMUA_Achr7P03680_001	Banana	plasma membrane	75.8	78.29
VIT_14s0030g00830.t01	Wine grape	cytosol	73.25	76.16
KXG36882	Sorghum	cytosol	80.25	75.9
CDY22663	Canola	plastid	74.52	61.58
VIT_14s0036g01320.t01	Wine grape	cytosol	30.57	60.76
HORVU2Hr1G021110.3	Barley	plastid	61.78	60.62
TraesCS7A01G292100.1	Wheat	plastid	63.06	49.25
Zm00001d022505_P002	Maize	cytosol	77.71	47.29
TraesCS4A01G065800.2	Wheat	unclear	57.32	42.45

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036423	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087	ScanProsite:PS00332
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	EnsemblPlantsGene:TraesCS2A01G121200	EnsemblPlants:TraesCS2A01G121200.1	TIGR:cd00305	:	:

Description

No Description!

Coordinates

chr2A:+:70984323..70986598

Molecular Weight (calculated)

15702.5 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.015

Length

157 amino acids

Sequence
(BLAST)

001: QITHTMVKAV AVLTGSEGVK GTIFFTQEGE GPTTVTGSVT GLKEGLHGFH VHALGDTTNG CMSTGPHFNP AGHVHGAPED EIRHAGDLGN VTAGVDGVAS
101: INITDCHIPL TGPNSIVGRA VVVHGDADDL GKGGHELSKS TGNAGARVAC GIIGLQG

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.