CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

plasma membrane: 19658398
plasma membrane: 20209511
extracellular: 20458513
nucleus: 21132161
extracellular: 22945350

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 20209511 doi

MZ Nouri, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba, Tsukuba, Japan.

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 20458513 doi

S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa

National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68647	Soybean	extracellular	94.74	94.74
OQU92597	Sorghum	cytosol	86.18	86.18
VIT_14s0030g00950.t01	Wine grape	cytosol	79.61	83.45
AT1G08830.1	Thale cress	cytosol	82.89	82.89
Bra031642.1-P	Field mustard	cytosol	82.24	82.24
Solyc01g067740.2.1	Tomato	extracellular	82.24	82.24
CDX93533	Canola	cytosol	82.24	82.24
CDY06331	Canola	cytosol	82.24	82.24
Os03t0351500-01	Rice	extracellular	81.58	81.58
PGSC0003DMT400027651	Potato	cytosol	81.58	81.58
CDX95028	Canola	cytosol	81.58	81.58
VIT_14s0030g00830.t01	Wine grape	cytosol	79.61	80.13
TraesCS2D01G123300.1	Wheat	extracellular, golgi, unclear	79.61	79.61
TraesCS2A01G121200.1	Wheat	golgi, unclear	80.92	78.34
KXG36882	Sorghum	cytosol	82.89	75.9
HORVU5Hr1G066230.1	Barley	cytosol	65.13	68.75
HORVU5Hr1G066930.1	Barley	cytosol	63.82	67.36
CDY22663	Canola	plastid	78.95	63.16
VIT_14s0036g01320.t01	Wine grape	cytosol	32.24	62.03
Zm00001d047479_P002	Maize	cytosol	71.71	58.29
KRH08504	Soybean	cytosol	62.5	56.89
HORVU2Hr1G021110.3	Barley	plastid	53.29	50.62
KRH26536	Soybean	plastid	59.87	49.73
KRH25109	Soybean	plastid	64.47	48.04
GSMUA_Achr8P09910_001	Banana	cytosol, peroxisome, plastid	46.71	47.97
Zm00001d029170_P004	Maize	cytosol	73.03	47.84
Zm00001d022505_P002	Maize	cytosol	78.95	46.51
KRH30559	Soybean	plastid	61.84	44.98

Protein Annotations

MapMan:10.2.2.3	EntrezGene:100499991	Gene3D:2.60.40.200	EMBL:BT090454	UniProt:C6SZ56	EnsemblPlantsGene:GLYMA_19G240400
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016209
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:IPR036423
EnsemblPlants:KRG96907	ProteinID:KRG96907	ProteinID:KRG96907.1	ProteinID:KRG96908.1	PFAM:PF00080	PRINTS:PR00068
ScanProsite:PS00087	ScanProsite:PS00332	PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	MetaCyc:PWY-6854	UniProt:Q7M1R5
InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI00001752A6
SEG:seg	:	:	:	:	:

Description

SOD1hypothetical protein

Coordinates

chr19:+:48827537..48831035

Molecular Weight (calculated)

15194.6 Da

IEP (calculated)

5.395

GRAVY (calculated)

-0.172

Length

152 amino acids

Sequence
(BLAST)

001: MVKAVAVLGS SEGVTGTIFF TQEGNGPTTV TGSLAGLKPG LHGFHVHALG DTTNGCLSTG AHFNPNNNEH GAPEDENRHA GDLGNVNVGD DGTVSFSITD
101: SQIPLTGPNS IIGRAVVVHA DSDDLGKGGH ELSKTTGNAG GRVACGIIGL QG

Best Arabidopsis Sequence Match ( AT1G08830.2 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.