Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0030g00830.t01 | Wine grape | cytosol | 93.1 | 89.4 |
| OQU92597 | Sorghum | cytosol | 86.21 | 82.24 |
| PGSC0003DMT400027651 | Potato | cytosol | 84.83 | 80.92 |
| CDX93533 | Canola | cytosol | 84.14 | 80.26 |
| Solyc01g067740.2.1 | Tomato | extracellular | 84.14 | 80.26 |
| Os03t0351500-01 | Rice | extracellular | 84.14 | 80.26 |
| KRH68647 | Soybean | extracellular | 84.14 | 80.26 |
| Bra031642.1-P | Field mustard | cytosol | 83.45 | 79.61 |
| KRG96907 | Soybean | extracellular, plasma membrane | 83.45 | 79.61 |
| AT1G08830.1 | Thale cress | cytosol | 83.45 | 79.61 |
| CDY06331 | Canola | cytosol | 83.45 | 79.61 |
| CDX95028 | Canola | cytosol | 83.45 | 79.61 |
| TraesCS2D01G123300.1 | Wheat | extracellular, golgi, unclear | 82.07 | 78.29 |
| TraesCS2A01G121200.1 | Wheat | golgi, unclear | 81.38 | 75.16 |
| KXG36882 | Sorghum | cytosol | 85.52 | 74.7 |
| VIT_14s0036g01320.t01 | Wine grape | cytosol | 36.55 | 67.09 |
| HORVU5Hr1G066230.1 | Barley | cytosol | 64.83 | 65.28 |
| HORVU5Hr1G066930.1 | Barley | cytosol | 64.14 | 64.58 |
| CDY22663 | Canola | plastid | 80.69 | 61.58 |
| VIT_08s0007g07280.t01 | Wine grape | cytosol, mitochondrion | 64.83 | 60.26 |
| Zm00001d047479_P002 | Maize | cytosol | 71.72 | 55.62 |
| GSMUA_Achr8P09910_001 | Banana | cytosol, peroxisome, plastid | 50.34 | 49.32 |
| HORVU2Hr1G021110.3 | Barley | plastid | 53.79 | 48.75 |
| Zm00001d022505_P002 | Maize | cytosol | 81.38 | 45.74 |
| Zm00001d029170_P004 | Maize | cytosol | 73.1 | 45.69 |
| VIT_06s0061g00750.t01 | Wine grape | extracellular, plastid | 59.31 | 40.57 |
Protein Annotations
| MapMan:10.2.2.3 | EntrezGene:100265553 | wikigene:100265553 | Gene3D:2.60.40.200 | ProteinID:CCB58140 | ProteinID:CCB58140.1 |
| UniProt:F6HTX9 | EMBL:FN596249 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 | GO:GO:0005488 |
| GO:GO:0005507 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006801 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009987 | GO:GO:0016491 | GO:GO:0019430 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036423 |
| EntrezGene:LOC100265553 | wikigene:LOC100265553 | PFAM:PF00080 | PRINTS:PR00068 | ScanProsite:PS00087 | ScanProsite:PS00332 |
| PANTHER:PTHR10003 | PANTHER:PTHR10003:SF63 | InterPro:SOD-like_Cu/Zn_dom_sf | InterPro:SOD_Cu/Zn_/chaperone | InterPro:SOD_Cu/Zn_BS | InterPro:SOD_Cu_Zn_dom |
| SUPFAM:SSF49329 | UniParc:UPI0001985FBB | ArrayExpress:VIT_14s0030g00950 | EnsemblPlantsGene:VIT_14s0030g00950 | EnsemblPlants:VIT_14s0030g00950.t01 | RefSeq:XP_002269522 |
| RefSeq:XP_002269522.1 | : | : | : | : | : |
Description
Superoxide dismutase [Cu-Zn] [Source:UniProtKB/TrEMBL;Acc:F6HTX9]
Coordinates
chr14:+:5248944..5251741
Molecular Weight (calculated)
14595.0 Da
IEP (calculated)
5.419
GRAVY (calculated)
-0.163
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAVAVLNS NEGVCGTIYF AEEGDGSTTV TGSLSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPAGKEH GAPEDENRHA GDLGNVIVGE DGMYYIPLTG
101: SNSIVGRAVV VHADPDDLGK GGHELSKSTG NAGGRVACGV IGLQG
101: SNSIVGRAVV VHADPDDLGK GGHELSKSTG NAGGRVACGV IGLQG
001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
Arabidopsis Description
CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.