Factsheet for GSMUA_Achr8P09910_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g00950.t01	Wine grape	cytosol	49.32	50.34
Solyc01g067740.2.1	Tomato	extracellular	50.0	48.68
PGSC0003DMT400027651	Potato	cytosol	50.0	48.68
GSMUA_Achr2P02380_001	Banana	cytosol	50.0	48.68
CDX93533	Canola	cytosol	48.65	47.37
CDX95028	Canola	cytosol	48.65	47.37
VIT_14s0030g00830.t01	Wine grape	cytosol	47.97	47.02
Bra031642.1-P	Field mustard	cytosol	47.97	46.71
KRG96907	Soybean	extracellular, plasma membrane	47.97	46.71
GSMUA_Achr7P03680_001	Banana	plasma membrane	47.97	46.71
CDY06331	Canola	cytosol	47.97	46.71
AT1G08830.1	Thale cress	cytosol	47.97	46.71
KRH68647	Soybean	extracellular	47.3	46.05
VIT_14s0036g01320.t01	Wine grape	cytosol	20.27	37.97
CDY22663	Canola	plastid	47.97	37.37
GSMUA_Achr4P06850_001	Banana	cytoskeleton, cytosol, plastid	39.86	36.88
GSMUA_Achr10P...	Banana	plastid	42.57	29.17
GSMUA_Achr9P20410_001	Banana	plastid	43.92	28.38

Protein Annotations

MapMan:10.2.2.3	Gene3D:2.60.40.200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006412	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0010039
GO:GO:0010193	GO:GO:0019430	GO:GO:0019538	GO:GO:0034599	GO:GO:0035195	GO:GO:0040029
GO:GO:0042742	GO:GO:0046688	GO:GO:0046872	GO:GO:0055114	GO:GO:0071280	GO:GO:0071329
GO:GO:0071457	GO:GO:0071472	GO:GO:0071484	GO:GO:0071493	EnsemblPlantsGene:GSMUA_Achr8G09910_001	EnsemblPlants:GSMUA_Achr8P09910_001
EnsemblPlants:GSMUA_Achr8T09910_001	InterPro:IPR036423	UniProt:M0TP44	PFAM:PF00080	PRINTS:PR00068	ScanProsite:PS00087
PANTHER:PTHR10003	PANTHER:PTHR10003:SF34	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu/Zn_BS	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI0002964EBF	:	:	:	:

Description

copper/zinc superoxide dismutase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G09910_001]

Coordinates

chr8:-:7033860..7035515

Molecular Weight (calculated)

15674.1 Da

IEP (calculated)

4.859

GRAVY (calculated)

0.164

Length

148 amino acids

Sequence
(BLAST)

001: MCRNMVKAVA VLGGTEGVGG VIYFGQEGNG PTMVNGNISG LSPGLHGFHV HEFGDTTNGC MSTGPHFNPT GEDHGDREDP VRHIGDLGNV IAGDDGARLF
101: LHLAMIMISH SSDVTPLLAE LLLCMRILMI LEGVGMNLAR PLEILVQE

Best Arabidopsis Sequence Match ( AT1G08830.1 )
(BLAST)

001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG

Arabidopsis Description

CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.