Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P03680_001 | Banana | plasma membrane | 88.16 | 88.16 |
| OQU92597 | Sorghum | cytosol | 86.84 | 86.84 |
| Os03t0351500-01 | Rice | extracellular | 86.84 | 86.84 |
| TraesCS2D01G123300.1 | Wheat | extracellular, golgi, unclear | 80.92 | 80.92 |
| KXG36882 | Sorghum | cytosol | 87.5 | 80.12 |
| TraesCS2A01G121200.1 | Wheat | golgi, unclear | 80.26 | 77.71 |
| HORVU5Hr1G066230.1 | Barley | cytosol | 66.45 | 70.14 |
| HORVU5Hr1G066930.1 | Barley | cytosol | 65.79 | 69.44 |
| Zm00001d047479_P002 | Maize | cytosol | 71.71 | 58.29 |
| GSMUA_Achr4P06850_001 | Banana | cytoskeleton, cytosol, plastid | 61.18 | 58.12 |
| HORVU2Hr1G021110.3 | Barley | plastid | 53.95 | 51.25 |
| GSMUA_Achr8P09910_001 | Banana | cytosol, peroxisome, plastid | 48.68 | 50.0 |
| Zm00001d022505_P002 | Maize | cytosol | 84.87 | 50.0 |
| Zm00001d029170_P004 | Maize | cytosol | 73.03 | 47.84 |
| GSMUA_Achr10P... | Banana | plastid | 62.5 | 43.98 |
| GSMUA_Achr9P20410_001 | Banana | plastid | 63.16 | 41.92 |
Protein Annotations
| MapMan:10.2.2.3 | Gene3D:2.60.40.200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 | GO:GO:0005488 |
| GO:GO:0006801 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016491 |
| GO:GO:0019430 | GO:GO:0046872 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr2G02380_001 | EnsemblPlants:GSMUA_Achr2P02380_001 | EnsemblPlants:GSMUA_Achr2T02380_001 |
| InterPro:IPR036423 | UniProt:M0S4H9 | PFAM:PF00080 | PRINTS:PR00068 | ScanProsite:PS00087 | ScanProsite:PS00332 |
| PANTHER:PTHR10003 | PANTHER:PTHR10003:SF34 | InterPro:SOD-like_Cu/Zn_dom_sf | InterPro:SOD_Cu/Zn_/chaperone | InterPro:SOD_Cu/Zn_BS | InterPro:SOD_Cu_Zn_dom |
| SUPFAM:SSF49329 | UniParc:UPI00029615CE | : | : | : | : |
Description
Superoxide dismutase [Cu-Zn] [Source:GMGC_GENE;Acc:GSMUA_Achr2G02380_001]
Coordinates
chr2:+:8256889..8260565
Molecular Weight (calculated)
15229.8 Da
IEP (calculated)
5.776
GRAVY (calculated)
-0.237
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAVVVLGG SEDVKGTVYF SQEGDGPTTV TGSISGLKPG LHGFHVHALG DTTNGCMSTG PHFNPVGKEH GAPEDDNRHA GDLGNVTAGE DGTVTISKVD
101: NQIPLSGPNS IIGRAVVVHA DPDDLGKGGH ELSKSTGNAG GRVACGIIGL QG
101: NQIPLSGPNS IIGRAVVVHA DPDDLGKGGH ELSKSTGNAG GRVACGIIGL QG
001: MAKGVAVLNS SEGVTGTIFF TQEGDGVTTV SGTVSGLKPG LHGFHVHALG DTTNGCMSTG PHFNPDGKTH GAPEDANRHA GDLGNITVGD DGTATFTITD
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
101: CQIPLTGPNS IVGRAVVVHA DPDDLGKGGH ELSLATGNAG GRVACGIIGL QG
Arabidopsis Description
CSD1Superoxide dismutase [Cu-Zn] 1 [Source:UniProtKB/Swiss-Prot;Acc:P24704]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.